RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, human

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-210	ENST00000534172	EFCAB12	Q6NXP0	572 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	DARS2	Q6PI48	645 aa	Known RBP	4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	MAMDC4	Q6UXC1	1216 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	SGMS1	Q86VZ5	419 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	KIAA0319L	Q8IZA0	1049 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	MDM1	Q8TC05	714 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	CDK5RAP3	Q96JB5	506 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	SCLT1	Q96NL6	688 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	CPPED1	Q9BRF8	314 aa	Predicted RBP	4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	DEF6	Q9H4E7	631 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	SIDT1	Q9NXL6	827 aa	Known RBP	4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	SWAP70	Q9UH65	585 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	L1RE1	Q9UN81	338 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	TDRD9	Q8NDG6	1382 aa	Known RBP	4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	UHRF1BP1	Q6BDS2	1440 aa		4.23	□□□□□ -1.73
CSMD3-210	ENST00000534172	TBKBP1	A7MCY6	615 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	POMC	P01189	267 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	ALDH2	P05091	517 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	ALOX15	P16050	662 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	YY1	P25490	414 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	GPSM2	P81274	684 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	MTM1	Q13496	603 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	ELAVL1	Q15717	326 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	NAIF1	Q69YI7	327 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	NPNT	Q6UXI9	565 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	GPRIN1	Q7Z2K8	1008 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	LOXL4	Q96JB6	756 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	TMX3	Q96JJ7	454 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	PTPN18	Q99952	460 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	KRTAP4-12	Q9BQ66	201 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	LRFN3	Q9BTN0	628 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	ADAM7	Q9H2U9	754 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	TRMT13	Q9NUP7	481 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	SOGA1	O94964	1423 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	CAPN14	A8MX76	684 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	CCER2	I3L3R5	266 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	ANXA1	P04083	346 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	PEX2	P28328	305 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	SLC6A9	P48067	706 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	DSC2	Q02487	901 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	FOXL1	Q12952	345 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	TUBB8	Q3ZCM7	444 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	SPATS1	Q496A3	300 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	PABPC1L	Q4VXU2	614 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	OR2I1P	Q8NGU4	316 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	CCHCR1	Q8TD31	782 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	ATXN2L	Q8WWM7	1075 aa	Known RBP	4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	GNRHR2	Q96P88	292 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	BDH2	Q9BUT1	245 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	TESMIN	Q9Y4I5	508 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172	POGZ	Q7Z3K3	1410 aa		4.22	□□□□□ -1.73
CSMD3-210	ENST00000534172		A0A0G2JLL6	359 aa	Predicted RBP	4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	GOLIM4	O00461	696 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	FOXS1	O43638	330 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	HK3	P52790	923 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	IFIT5	Q13325	482 aa	Known RBP	4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	IL10RA	Q13651	578 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	TRIM14	Q14142	442 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	C3orf36	Q3SXR2	165 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	DACT2	Q5SW24	774 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	RNF220	Q5VTB9	566 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	LIMS2	Q7Z4I7	341 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	ZNF354C	Q86Y25	554 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	MYLK4	Q86YV6	388 aa	Predicted RBP	4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	KRTAP19-1	Q8IUB9	90 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	PLXDC1	Q8IUK5	500 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	NKAP	Q8N5F7	415 aa	Known RBP	4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172		Q8TCH9	128 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	TMEM176A	Q96HP8	235 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	MRGPRX4	Q96LA9	322 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	DCLRE1C	Q96SD1	692 aa	Known RBP	4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	C11orf54	Q9H0W9	315 aa	Predicted RBP	4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	CNNM1	Q9NRU3	951 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	RLIM	Q9NVW2	624 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	SIK3	Q9Y2K2	1263 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	STXBP5L	Q9Y2K9	1186 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	PCDHA13	Q9Y5I0	950 aa		4.21	□□□□□ -1.73
CSMD3-210	ENST00000534172	RASA4B	C9J798	803 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	RASA4	O43374	803 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	FTL	P02792	175 aa	Predicted RBP	4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	SPATA31D3	P0C874	917 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	RAP2A	P10114	183 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	HTR1B	P28222	390 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	MAN2A2	P49641	1150 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	CACNB3	P54284	484 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	ATP8B2	P98198	1209 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	TLE1	Q04724	770 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	PRKD1	Q15139	912 aa	Predicted RBP	4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	ALF	Q53S48	1182 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	CCDC157	Q569K6	752 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	SWSAP1	Q6NVH7	229 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	SPATA31D4	Q6ZUB0	917 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	HTR3D	Q70Z44	454 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	DEPTOR	Q8TB45	409 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	TFAP2C	Q92754	450 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	CRB3	Q9BUF7	120 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	MRI1	Q9BV20	369 aa		4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	FEZ2	Q9UHY8	353 aa	Predicted RBP	4.21	□□□□□ -1.74
CSMD3-210	ENST00000534172	GTF2A1L	Q9UNN4	478 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 104 ms