RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	ZNF785	A8K8V0	405 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	PLSCR1	O15162	318 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	PRSS23	O95084	383 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	ZBED1	O96006	694 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	HRG	P04196	525 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	MYB	P10242	640 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	TNFRSF1A	P19438	455 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	CACNB3	P54284	484 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	FAM189B	P81408	668 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	PIGF	Q07326	219 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	HLTF	Q14527	1009 aa	Known RBP eCLIP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	FOXR2	Q6PJQ5	311 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	NPNT	Q6UXI9	565 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	CHST15	Q7LFX5	561 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	KIAA0319L	Q8IZA0	1049 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF483	Q8TF39	744 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	TNPO1	Q92973	898 aa	Known RBP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	MYEOV	Q96EZ4	313 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	ZSWIM1	Q9BR11	485 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF747	Q9BV97	191 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	TLR10	Q9BXR5	811 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF768	Q9H5H4	540 aa	Known RBP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	SLAMF7	Q9NQ25	335 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.82	□□□□□ -1.64
CD44-233	ENST00000531141	USP25	Q9UHP3	1055 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	SLC45A2	Q9UMX9	530 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	PCDHA1	Q9Y5I3	950 aa		4.82	□□□□□ -1.64
CD44-233	ENST00000531141	FRMPD2	Q68DX3	1309 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141		A6NNZ2	444 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	TPP1	O14773	563 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	PHGDH	O43175	533 aa	Known RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	FRS3	O43559	492 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	GPANK1	O95872	356 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	INSRR	P14616	1297 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	LAG3	P18627	525 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	NR4A1	P22736	598 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	DDX6	P26196	483 aa	Known RBP eCLIP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	BMPR1A	P36894	532 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF135	P52742	658 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	PTTG1IP	P53801	180 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	SOX8	P57073	446 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	PSMC1	P62191	440 aa	Known RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	FAM193A	P78312	1265 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	POU6F2	P78424	691 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	HSD11B2	P80365	405 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF844	Q08AG5	666 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	ZXDC	Q2QGD7	858 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	LSM12	Q3MHD2	195 aa	Known RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	TIGD2	Q4W5G0	525 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	CRIP3	Q6Q6R5	217 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	RHOU	Q7L0Q8	258 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	MAEA	Q7L5Y9	396 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	PDPR	Q8NCN5	879 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	TTC17	Q96AE7	1141 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	MARS2	Q96GW9	593 aa	Known RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	CNPPD1	Q9BV87	410 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	TEX101	Q9BY14	249 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF341	Q9BYN7	854 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	TINAGL1	Q9GZM7	467 aa	Predicted RBP	4.81	□□□□□ -1.64
CD44-233	ENST00000531141	NRDE2	Q9H7Z3	1164 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	ARMT1	Q9H993	441 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	STAP2	Q9UGK3	403 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	FZD1	Q9UP38	647 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141	NEU2	Q9Y3R4	380 aa		4.81	□□□□□ -1.64
CD44-233	ENST00000531141		A0A1W2PPL8	197 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	TMEM200C	A6NKL6	621 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141		E9PLN8	166 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	ERN1	O75460	977 aa	Known RBP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	CDKL5	O76039	1030 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	ZNF202	O95125	648 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	AHSG	P02765	367 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	ELANE	P08246	267 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	MAK	P20794	623 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	TACR2	P21452	398 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	ZFP36	P26651	326 aa	Known RBP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	USP14	P54578	494 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	CXADR	P78310	365 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	DGCR2	P98153	550 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	EXOSC9	Q06265	439 aa	Known RBP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	TCF15	Q12870	199 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	HABP2	Q14520	560 aa	Predicted RBP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	PUM1	Q14671	1186 aa	Known RBP eCLIP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	SPDYE7P	Q495Y7	208 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	KHDC1L	Q5JSQ8	128 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	PPP4R4	Q6NUP7	873 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	KCNV1	Q6PIU1	500 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	DBX2	Q6ZNG2	339 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	FAM43A	Q8N2R8	423 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	HAS1	Q92839	578 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	MRGPRX1	Q96LB2	322 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	VKORC1	Q9BQB6	163 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	IMPG2	Q9BZV3	1241 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	ZMAT3	Q9HA38	289 aa	Known RBP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	RSAD1	Q9HA92	442 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	PIH1D1	Q9NWS0	290 aa	Known RBP	4.8	□□□□□ -1.64
CD44-233	ENST00000531141	GPRC5B	Q9NZH0	403 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	HSFX1	Q9UBD0	423 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	CPA4	Q9UI42	421 aa		4.8	□□□□□ -1.64
CD44-233	ENST00000531141	L1RE1	Q9UN81	338 aa		4.8	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms