RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TRMT1Q9NXH9 659 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 SLC27A5Q9Y2P5 690 aa8.49□□□□□ -1.05
LIMCH1-219ENST00000514096 LAD1O00515 517 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 ACKR2O00590 384 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 ASAP2O43150 1006 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 HCRTO43612 131 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 CUTAO60888 179 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 ASGR2P07307 311 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 SCNN1BP51168 640 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 NTHL1P78549 312 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 DMPKQ09013 629 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 COASYQ13057 564 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 KMT5BQ4FZB7 885 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 NAALADL2Q58DX5 795 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 FNBP1Q96RU3 617 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 PIEZO1Q92508 2521 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 COL1A2P08123 1366 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 EIF4E1BA6NMX2 242 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 IVLP07476 585 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 GALTP07902 379 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 OAS2P29728 719 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 STK4Q13043 487 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 CBWD2Q8IUF1 395 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 COLGALT1Q8NBJ5 622 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 C3orf20Q8ND61 904 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 PYM1Q9BRP8 204 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 TSPY26PQ9H489 355 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 AGO2Q9UKV8 859 aaKnown RBP8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 MYO6Q9UM54 1294 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 TBX20Q9UMR3 447 aa8.48□□□□□ -1.05
LIMCH1-219ENST00000514096 TMEM265A0A087WTH1 108 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 PRRG1O14668 218 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 EFCAB14O75071 495 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 TMEM191BP0C7N4 346 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SOX4Q06945 474 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 PTCRAQ6ISU1 281 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 TMEM161BQ8NDZ6 487 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SPDYE1Q8NFV5 336 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SPPL3Q8TCT6 385 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 PPP2R3CQ969Q6 453 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 ZMAT2Q96NC0 199 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CASD1Q96PB1 797 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 C2orf40Q9H1Z8 148 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 ACBD3Q9H3P7 528 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CDY1Q9Y6F8 540 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 TRIM49BA6NDI0 452 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 LACTBL1A8MY62 500 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CCL16O15467 120 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 PARNO95453 639 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 NFICP08651 508 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 AMPD3Q01432 767 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SLC7A5Q01650 507 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 ACTN3Q08043 901 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 MAPK7Q13164 816 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 FBXO38Q6PIJ6 1188 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 OLFML1Q6UWY5 402 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 HS2ST1Q7LGA3 356 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 KIAA1328Q86T90 577 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SCN4BQ8IWT1 228 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 ANKRD7Q92527 254 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SCAND2PQ9GZW5 306 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 VPS18Q9P253 973 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 THEGQ9P2T0 379 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 DBR1Q9UK59 544 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 GAS2O43903 313 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 TRIM49P0CI25 452 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 TRIM49CP0CI26 452 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CD58P19256 250 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 PRPHP41219 470 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 RPS6KA3P51812 740 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 LRRC23Q53EV4 343 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 UBXN11Q5T124 520 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 ZFYVE27Q5T4F4 411 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 TAS1R3Q7RTX0 852 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 C14orf80Q86SX3 495 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 WDR75Q8IWA0 830 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 B4GALNT2Q8NHY0 566 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CCDC47Q96A33 483 aaKnown RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 AK8Q96MA6 479 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CEP89Q96ST8 783 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SEPT5Q99719 369 aaPredicted RBP8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 LPIN3Q9BQK8 851 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 MTMR12Q9C0I1 747 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CYP4F11Q9HBI6 524 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 AGAP1Q9UPQ3 857 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 SNX9Q9Y5X1 595 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 CFAP54Q96N23 3096 aa8.47□□□□□ -1.05
LIMCH1-219ENST00000514096 IGKV6-21A0A0C4DH24 114 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 SMIM28A0A1B0GU29 152 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 TKTP29401 623 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 BFSP1Q12934 665 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 TSR1Q2NL82 804 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 JADE1Q6IE81 842 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 CSGALNACT2Q8N6G5 542 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 GOLGA5Q8TBA6 731 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 ACO2Q99798 780 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 PI4K2AQ9BTU6 479 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 TRIM9Q9C026 710 aa8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 MRPL17Q9NRX2 175 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-219ENST00000514096 HCFC2Q9Y5Z7 792 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms