RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 SLC12A6Q9UHW9 1150 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ROBO2Q9HCK4 1378 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 TMEM131LA2VDJ0 1609 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC85CA6NKD9 419 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 PSTPIP1O43586 416 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CETPP11597 493 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 SMARCA1P28370 1054 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 RGS2P41220 211 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 GPC5P78333 572 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 OASLQ15646 514 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC153Q494R4 210 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 PACS2Q86VP3 889 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 OR2W6PQ8NHA6 318 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 OTULINQ96BN8 352 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 MS4A14Q96JA4 679 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 GTSE1Q9NYZ3 720 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 USE1Q9NZ43 259 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 C15orf41Q9Y2V0 281 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 PLEKHG2Q9H7P9 1386 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 POTEMA6NI47 508 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CIAO1O76071 339 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 PDE9AO76083 593 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CELF2O95319 508 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ABCB1P08183 1280 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CHN1P15882 459 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 RPS12P25398 132 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 NCAPHQ15003 741 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 THOC7Q6I9Y2 204 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC137Q6PK04 289 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 UNC13DQ70J99 1090 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 NARFQ9UHQ1 456 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 DLC1Q96QB1 1528 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 SIGLEC1Q9BZZ2 1709 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ARPC4-TTLL3A0A0A6YYG9 625 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 KDM4FA0A1W2PPD8 638 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF263O14978 683 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ATP9AO75110 1047 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 PSMA2P25787 234 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ANXA13P27216 316 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 KRT20P35900 424 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF554Q86TJ5 538 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 PASD1Q8IV76 773 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ZBED8Q8IZ13 594 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 AGR3Q8TD06 166 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ANKRD36BP1Q96IX9 119 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 MLPHQ9BV36 600 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 WDR11Q9BZH6 1224 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 SNX12Q9UMY4 172 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 SNAP25P60880 206 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 RGS21Q2M5E4 152 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PCNX4Q63HM2 1172 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 KRT39Q6A163 491 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 C16orf89Q6UX73 402 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 LRIG3Q6UXM1 1119 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 LRRC31Q6UY01 552 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC81Q6ZN84 652 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ERICH1Q86X53 443 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 EGFL6Q8IUX8 553 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PPHLN1Q8NEY8 458 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 C1orf54Q8WWF1 131 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 CCSER2Q9H7U1 834 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 HEY1Q9Y5J3 304 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 RIMS1Q86UR5 1692 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 USP6P35125 1406 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PDZK1P1A8MUH7 402 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ATP6V1G1O75348 118 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 IMPDH2P12268 514 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 GCLMP48507 274 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 AP1S2P56377 157 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PLOD1Q02809 727 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PDIA2Q13087 525 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 KYNUQ16719 465 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 MDH1BQ5I0G3 518 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 SHC4Q6S5L8 630 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 CCNI2Q6ZMN8 369 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PPP4R3CPQ6ZMV5 832 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 TAF8Q7Z7C8 310 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF579Q8NAF0 562 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 RBM46Q8TBY0 533 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ITFG2Q969R8 447 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ARL8AQ96BM9 186 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 KANSL2Q9H9L4 492 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNRF3Q9ULT6 936 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PNMA8CA0A1B0GUJ8 204 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 KLHL2O95198 593 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 CHRNA3P32297 505 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 PPARGP37231 505 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 SCTRP47872 440 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ALDH18A1P54886 795 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ABATP80404 500 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 GPS1Q13098 491 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 EFR3AQ14156 821 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 SLC15A2Q16348 729 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ZFRQ96KR1 1074 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 ACAP3Q96P50 834 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 OSBPL10Q9BXB5 764 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 REXO4Q9GZR2 422 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 HMG20AQ9NP66 347 aa9.13□□□□□ -0.95
LIMCH1-218ENST00000513024 SEC31BQ9NQW1 1179 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms