RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 NUP88Q99567 741 aaPredicted RBP7.36□□□□□ -1.23
SF3B1-212ENST00000496458 UNKLQ9H9P5 680 aaKnown RBP7.36□□□□□ -1.23
SF3B1-212ENST00000496458 SLAMF7Q9NQ25 335 aa7.36□□□□□ -1.23
SF3B1-212ENST00000496458 TBCCD1Q9NVR7 557 aa7.36□□□□□ -1.23
SF3B1-212ENST00000496458 ABCF2Q9UG63 623 aa7.36□□□□□ -1.23
SF3B1-212ENST00000496458 ANKRD6Q9Y2G4 727 aa7.36□□□□□ -1.23
SF3B1-212ENST00000496458 SLC16A6O15403 523 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 GNAI3P08754 354 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 AKAP5P24588 427 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 SEC24CP53992 1094 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 GNAI1P63096 354 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 PURAQ00577 322 aaKnown RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 ZNF844Q08AG5 666 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 HEATR3Q7Z4Q2 680 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 COLGALT2Q8IYK4 626 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 Q8NA96 180 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 PDPRQ8NCN5 879 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 NSUN7Q8NE18 718 aaKnown RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 FUBP1Q96AE4 644 aaKnown RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 Q96MF0 132 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 C1orf43Q9BWL3 253 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 RHOBTB2Q9BYZ6 727 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 CASS4Q9NQ75 786 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 GNL3LQ9NVN8 582 aaKnown RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 SIDT1Q9NXL6 827 aaKnown RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 VSX1Q9NZR4 365 aaPredicted RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 C11orf21Q9P2W6 132 aa7.35□□□□□ -1.23
SF3B1-212ENST00000496458 EPN1Q9Y6I3 576 aaPredicted RBP7.35□□□□□ -1.23
SF3B1-212ENST00000496458 MYADML2A6NDP7 307 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 ARIH2O95376 493 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 PRDX5P30044 214 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 CYP2C19P33261 490 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 MAP2K6P52564 334 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 HK3P52790 923 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 PSMC1P62191 440 aaKnown RBP7.34□□□□□ -1.23
SF3B1-212ENST00000496458 FOXI1Q12951 378 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 KRTAP15-1Q3LI76 137 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 CFAP52Q8N1V2 620 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 TMEM125Q96AQ2 219 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 MVB12AQ96EY5 273 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 PTCD3Q96EY7 689 aaKnown RBP7.34□□□□□ -1.23
SF3B1-212ENST00000496458 BRD9Q9H8M2 597 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 FEZ2Q9UHY8 353 aaPredicted RBP7.34□□□□□ -1.23
SF3B1-212ENST00000496458 ZNF180Q9UJW8 692 aa7.34□□□□□ -1.23
SF3B1-212ENST00000496458 TRGV11A0A075B6L2 103 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 ZNF785A8K8V0 405 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 AKAP10O43572 662 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 ANXA1P04083 346 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 GJB1P08034 283 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 FTH1P19P0C7X4 201 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 KCNA2P16389 499 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 PHKA1P46020 1223 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 PIK3CGP48736 1102 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 RAB27AP51159 221 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 INHBEP58166 350 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 MPP3Q13368 585 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 CCDC157Q569K6 752 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 CLNKQ7Z7G1 428 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 SH2D3CQ8N5H7 860 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 MAP3K14Q99558 947 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 RTFDC1Q9BY42 306 aaPredicted RBP7.33□□□□□ -1.24
SF3B1-212ENST00000496458 KMT5AQ9NQR1 393 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 LMBRD1Q9NUN5 540 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 CTTNBP2NLQ9P2B4 639 aa7.33□□□□□ -1.24
SF3B1-212ENST00000496458 PRAMEF33A0A0G2JMD5 474 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 A0A1W2PS29 197 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 E2F8A0AVK6 867 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 E9PLN8 166 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 PRAMEF10O60809 474 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 PIGFQ07326 219 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 PREPLQ4J6C6 727 aaPredicted RBP7.32□□□□□ -1.24
SF3B1-212ENST00000496458 IFIT1BQ5T764 474 aaKnown RBP7.32□□□□□ -1.24
SF3B1-212ENST00000496458 FAM90A1Q86YD7 464 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 PDSS2Q86YH6 399 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 GRAMD1CQ8IYS0 662 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 SSH3Q8TE77 659 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 TNPO1Q92973 898 aaKnown RBP7.32□□□□□ -1.24
SF3B1-212ENST00000496458 HPS3Q969F9 1004 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 VKORC1Q9BQB6 163 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 WDCPQ9H6R7 721 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 CFAP97Q9P2B7 532 aa7.32□□□□□ -1.24
SF3B1-212ENST00000496458 MAST3O60307 1309 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 CCDC195A0A1B0GUA6 201 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 TOR1BO14657 336 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 OFD1O75665 1012 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 ESRRBO95718 433 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 PLA2G5P39877 138 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 ZNF135P52742 658 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-212ENST00000496458 MC2RQ01718 297 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 FPGSQ05932 587 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 ZNF267Q14586 743 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-212ENST00000496458 SMN1Q16637 294 aaKnown RBP7.31□□□□□ -1.24
SF3B1-212ENST00000496458 CD300EQ496F6 205 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-212ENST00000496458 ODR4Q5SWX8 454 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 TAPT1Q6NXT6 567 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 Q6ZNX1 250 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 JPH3Q8WXH2 748 aaPredicted RBP7.31□□□□□ -1.24
SF3B1-212ENST00000496458 SCAMP4Q969E2 229 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 AIFM2Q9BRQ8 373 aa7.31□□□□□ -1.24
SF3B1-212ENST00000496458 RLIMQ9NVW2 624 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms