RNA–Protein interactions for RNA: ENST00000496047.5

USP39-219, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-219ENST00000496047 TBC1D8O95759 1140 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 C4BPAP04003 597 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 CALB1P05937 261 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 MMEP08473 750 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 MCF2P10911 925 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 POLR2BP30876 1174 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 MAN1A1P33908 653 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 SLC1A1P43005 524 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 PTENP60484 403 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 IGBP1P78318 339 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 FMO1Q01740 532 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 TAP1Q03518 808 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 ARHGAP1Q07960 439 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 PPFIA1Q13136 1202 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 CUL1Q13616 776 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 SMC1AQ14683 1233 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 CASP8Q14790 479 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 TAF1CQ15572 869 aaPredicted RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 QPCTQ16769 361 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 FAM187BQ17R55 369 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 CLEC16AQ2KHT3 1053 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 ZNF699Q32M78 642 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 DUSP28Q4G0W2 176 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 ODF2Q5BJF6 829 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 BEND6Q5SZJ8 279 aaPredicted RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 TDRD10Q5VZ19 366 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 C15orf39Q6ZRI6 1047 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 TSHZ1Q6ZSZ6 1077 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 NOP9Q86U38 636 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 SLC47A2Q86VL8 602 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 RETREG3Q86VR2 466 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 TRIM50Q86XT4 487 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 CD302Q8IX05 232 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 LRRC71Q8N4P6 559 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 LRRC57Q8N9N7 239 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 EIF1ADQ8N9N8 165 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 RBBP8NLQ8NC74 664 aaPredicted RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 FAM71BQ8TC56 605 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 WHAMMQ8TF30 809 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 SLC20A1Q8WUM9 679 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 SOCS4Q8WXH5 440 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 BRI3BPQ8WY22 251 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 SEMA4DQ92854 862 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 HES6Q96HZ4 224 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 VCPIP1Q96JH7 1222 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 MAML3Q96JK9 1138 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 KREMEN1Q96MU8 473 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 SYT11Q9BT88 431 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 NUP85Q9BW27 656 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 NIF3L1Q9GZT8 377 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 MIS12Q9H081 205 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 TOPORSQ9NS56 1045 aaPredicted RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 CNOT8Q9UFF9 292 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 PARP2Q9UGN5 583 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 STRIP2Q9ULQ0 834 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 PACSIN2Q9UNF0 486 aaPredicted RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 UTP11Q9Y3A2 253 aaKnown RBP7.39□□□□□ -1.23
USP39-219ENST00000496047 SCN1AP35498 2009 aa7.39□□□□□ -1.23
USP39-219ENST00000496047 FRMPD3Q5JV73 1810 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 GOLGA6L10A6NI86 522 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 TMEM110-MUSTN1A8MSY1 372 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 H3BRB1 525 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 XPOTO43592 962 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 BUB1BO60566 1050 aaPredicted RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 PEX10O60683 326 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 C22orf31O95567 290 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 LSM8O95777 96 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 CYP1A2P05177 515 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 MMP3P08254 477 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 INSRRP14616 1297 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 CTNNA2P26232 953 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 OAS2P29728 719 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 ATICP31939 592 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 RGS2P41220 211 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 CPT1AP50416 773 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 CLCN3P51790 818 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 YARSP54577 528 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 INHBEP58166 350 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 TFAMQ00059 246 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 SREBF2Q12772 1141 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 MTMR3Q13615 1198 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 ACVR2BQ13705 512 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 DHX34Q14147 1143 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 HLTFQ14527 1009 aaKnown RBP eCLIP7.38□□□□□ -1.23
USP39-219ENST00000496047 MESDQ14696 234 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 ZNF667Q5HYK9 610 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 MORN1Q5T089 497 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 LMBRD2Q68DH5 695 aaPredicted RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 TMEM270Q6UE05 265 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 KLHL7Q8IXQ5 586 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 THNSL1Q8IYQ7 743 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 RASGEF1CQ8N431 466 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 ZSWIM2Q8NEG5 633 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 COPS5Q92905 334 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 LRRC45Q96CN5 670 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 RNPC3Q96LT9 517 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 KRT12Q99456 494 aa7.38□□□□□ -1.23
USP39-219ENST00000496047 POP1Q99575 1024 aaKnown RBP7.38□□□□□ -1.23
USP39-219ENST00000496047 ZSWIM1Q9BR11 485 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms