RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	ZBTB46	Q86UZ6	589 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	AOPEP	Q8N6M6	819 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896		Q8NA96	180 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	PDPR	Q8NCN5	879 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	SSH3	Q8TE77	659 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	KRTAP17-1	Q9BYP8	105 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	SPEF1	Q9Y4P9	236 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	PCDHA3	Q9Y5H8	950 aa		6.26	□□□□□ -1.41
PTPN4-212	ENST00000488896	MYADML2	A6NDP7	307 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	F2RL2	O00254	374 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	TOR1B	O14657	336 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	PDC	P20941	246 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	CLK3	P49761	638 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	MRPS35	P82673	323 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	SF3B3	Q15393	1217 aa	Known RBP	6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	PREPL	Q4J6C6	727 aa	Predicted RBP	6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	CCDC93	Q567U6	631 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	CLNK	Q7Z7G1	428 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	FBXO41	Q8TF61	875 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	RSAD1	Q9HA92	442 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	KIAA1586	Q9HCI6	787 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	LRIT1	Q9P2V4	623 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	DMTF1	Q9Y222	760 aa		6.25	□□□□□ -1.41
PTPN4-212	ENST00000488896	KCNA2	P16389	499 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	MC2R	Q01718	297 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	CATIP	Q7Z7H3	387 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	CFAP52	Q8N1V2	620 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	SH2D3C	Q8N5H7	860 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	C3orf20	Q8ND61	904 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	FUBP1	Q96AE4	644 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	C1orf43	Q9BWL3	253 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	BRD9	Q9H8M2	597 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	AASDHPPT	Q9NRN7	309 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	KCTD5	Q9NXV2	234 aa		6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	NOP58	Q9Y2X3	529 aa	Known RBP	6.24	□□□□□ -1.41
PTPN4-212	ENST00000488896	PRAMEF33	A0A0G2JMD5	474 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	ZNF785	A8K8V0	405 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	PEX1	O43933	1283 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	PRAMEF10	O60809	474 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	DTNB	O60941	627 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	GNAI3	P08754	354 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	FXR1	P51114	621 aa	Known RBP eCLIP	6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	RPS7	P62081	194 aa	Known RBP	6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	GNAI1	P63096	354 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	PRR16	Q569H4	304 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	DPY19L2P1	Q6NXN4	242 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	TAPT1	Q6NXT6	567 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	SLC30A10	Q6XR72	485 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	TSHZ1	Q6ZSZ6	1077 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	ADGRG3	Q86Y34	549 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	FAM177A1	Q8N128	213 aa	Predicted RBP	6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	CPA6	Q8N4T0	437 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	SIMC1	Q8NDZ2	872 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	SLC30A5	Q8TAD4	765 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	ACTRT2	Q8TDY3	377 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	CHMP4C	Q96CF2	233 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	HSPBAP1	Q96EW2	488 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	CTTNBP2NL	Q9P2B4	639 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	IP6K2	Q9UHH9	426 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	TLK1	Q9UKI8	766 aa		6.23	□□□□□ -1.41
PTPN4-212	ENST00000488896	hCG_2014768	A0A024R1R8	64 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	CCDC195	A0A1B0GUA6	201 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896		A0A1W2PS29	197 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	NT5C1B-RDH14	C9J2C7	533 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	SUN1	O94901	812 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	FTL	P02792	175 aa	Predicted RBP	6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	GJB1	P08034	283 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	GATA3	P23771	443 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	ANAPC15	P60006	121 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	PIGF	Q07326	219 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	ZNF169	Q14929	603 aa	Predicted RBP	6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	CCDC157	Q569K6	752 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	SP5	Q6BEB4	398 aa	Predicted RBP	6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	LNX2	Q8N448	690 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	TOR1AIP2	Q8NFQ8	470 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	TNPO1	Q92973	898 aa	Known RBP	6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	RGMA	Q96B86	450 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	LRIG1	Q96JA1	1093 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	TRIB1	Q96RU8	372 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	SMO	Q99835	787 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	INTS13	Q9NVM9	706 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	GNL3L	Q9NVN8	582 aa	Known RBP	6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	ABCF2	Q9UG63	623 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	POLH	Q9Y253	713 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	INSL6	Q9Y581	213 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896	SPATA31A6	Q5VVP1	1343 aa		6.22	□□□□□ -1.41
PTPN4-212	ENST00000488896		E9PLN8	166 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	POLRMT	O00411	1230 aa	Known RBP	6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	MGST3	O14880	152 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	YY2	O15391	372 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	VPS4B	O75351	444 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	ZNF135	P52742	658 aa	Predicted RBP	6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	SIM1	P81133	766 aa	Predicted RBP	6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	NOG	Q13253	232 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	DYRK1A	Q13627	763 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	USP45	Q70EL2	814 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	HEATR3	Q7Z4Q2	680 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	ADGRG5	Q8IZF4	528 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	CAGE1	Q8TC20	777 aa		6.21	□□□□□ -1.42
PTPN4-212	ENST00000488896	LPIN2	Q92539	896 aa		6.21	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms