RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 BCAP29Q9UHQ4 241 aa15.44■□□□□ 0.06
HDAC6-220ENST00000477528 SMG5Q9UPR3 1016 aaKnown RBP15.44■□□□□ 0.06
HDAC6-220ENST00000477528 TGFB1I1O43294 461 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 LCA5LO95447 670 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 FAM153BP0C7A2 387 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 PDGFRAP16234 1089 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 SAT1P21673 171 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 MAGEA4P43358 317 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 GTF2BQ00403 316 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 FAM153CQ494X1 144 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ZC3H18Q86VM9 953 aaKnown RBP15.43■□□□□ 0.06
HDAC6-220ENST00000477528 FAM193BQ96PV7 902 aaPredicted RBP15.43■□□□□ 0.06
HDAC6-220ENST00000477528 WHRNQ9P202 907 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 FAM153AQ9UHL3 310 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 PPP2R3BQ9Y5P8 575 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ROBO1Q9Y6N7 1651 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 VGLL3A8MV65 326 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 PROSCO94903 275 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 MYL3P08590 195 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ZFXP17010 805 aaPredicted RBP15.43■□□□□ 0.06
HDAC6-220ENST00000477528 PPP3CAQ08209 521 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ZCWPW2Q504Y3 356 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 SEZ6Q53EL9 994 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ZNF449Q6P9G9 518 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 C3orf20Q8ND61 904 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 CFAP61Q8NHU2 1237 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 CCT6BQ92526 530 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 AKT1S1Q96B36 256 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ARHGEF26Q96DR7 871 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 THOC1Q96FV9 657 aaKnown RBP15.43■□□□□ 0.06
HDAC6-220ENST00000477528 STAP1Q9ULZ2 295 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ATP8B3O60423 1300 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 CHUKO15111 745 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 CORO7P57737 925 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 CDC42EP1Q00587 391 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ZNF560Q96MR9 790 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 SNED1Q8TER0 1413 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 APOL1O14791 398 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 SPAG7O75391 227 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ITKQ08881 620 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 HEATR6Q6AI08 1181 aaKnown RBP15.43■□□□□ 0.06
HDAC6-220ENST00000477528 TWF2Q6IBS0 349 aaKnown RBP15.43■□□□□ 0.06
HDAC6-220ENST00000477528 C1orf228Q6PIY5 440 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 DEFB132Q7Z7B7 95 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 ANKRD13AQ8IZ07 590 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 PPM1NQ8N819 430 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 SGSM3Q96HU1 749 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 SERPINB12Q96P63 405 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 PPP1R12CQ9BZL4 782 aa15.43■□□□□ 0.06
HDAC6-220ENST00000477528 RCN2Q14257 317 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 SLC35G1Q2M3R5 365 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ANKMY2Q8IV38 441 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 GLIS2Q9BZE0 524 aaPredicted RBP15.42■□□□□ 0.06
HDAC6-220ENST00000477528 VCXQ9H320 206 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 DHX35Q9H5Z1 703 aaKnown RBP15.42■□□□□ 0.06
HDAC6-220ENST00000477528 TISP43B9A030 160 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ZNF263O14978 683 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ITGB5P18084 799 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 MAP3K21Q5TCX8 1036 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 HGSNATQ68CP4 663 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 RAPH1Q70E73 1250 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 SPATA21Q7Z572 469 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.42■□□□□ 0.068e-10■■□□□ 12.3
HDAC6-220ENST00000477528 GTF3C2Q8WUA4 911 aaPredicted RBP15.42■□□□□ 0.06
HDAC6-220ENST00000477528 CFAP73A6NFT4 308 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 RIBC1Q8N443 379 aaPredicted RBP15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ATG4AQ8WYN0 398 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 LRRC37BQ96QE4 947 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 CYTH2Q99418 400 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ZNF518BQ9C0D4 1074 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 MTMR12Q9C0I1 747 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 A0A0G2JND7 137 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 TMEM120BA0PK00 339 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 SMAPO00193 183 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 GIPC1O14908 333 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ADORA2BP29275 332 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 DLG4P78352 724 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 SNAPC2Q13487 334 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 C2CD6Q53TS8 623 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 NOP9Q86U38 636 aaKnown RBP15.42■□□□□ 0.06
HDAC6-220ENST00000477528 MCOLN2Q8IZK6 566 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 C2orf69Q8N8R5 385 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 LNX1Q8TBB1 728 aaPredicted RBP15.42■□□□□ 0.06
HDAC6-220ENST00000477528 MYCBPAPQ8TBZ2 947 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 ARL2BPQ9Y2Y0 163 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 SNX9Q9Y5X1 595 aa15.42■□□□□ 0.06
HDAC6-220ENST00000477528 TMPRSS15P98073 1019 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 VSIG10LQ86VR7 867 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 WDR49Q8IV35 697 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 TSEN2Q8NCE0 465 aaKnown RBP15.41■□□□□ 0.06
HDAC6-220ENST00000477528 ANKRD63C9JTQ0 380 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 CST8O60676 142 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 SMC1BQ8NDV3 1235 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 FBXO41Q8TF61 875 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 NT5C1AQ9BXI3 368 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 RSAD1Q9HA92 442 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 LPXNO60711 386 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 ESRRAP11474 423 aaPredicted RBP15.41■□□□□ 0.06
HDAC6-220ENST00000477528 LAMC2Q13753 1193 aa15.41■□□□□ 0.06
HDAC6-220ENST00000477528 MPZL3Q6UWV2 235 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms