RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 RFC5P40937 340 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 CLK2P49760 499 aaKnown RBP9.1□□□□□ -0.95
HPS4-206ENST00000439453 IL9RQ01113 521 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 ADCY1Q08828 1119 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 SIX1Q15475 284 aaPredicted RBP9.1□□□□□ -0.95
HPS4-206ENST00000439453 KYNUQ16719 465 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 BMT2Q1RMZ1 405 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 SRRM1Q8IYB3 904 aaKnown RBP9.1□□□□□ -0.95
HPS4-206ENST00000439453 DCAF4Q8WV16 495 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 DLGAP2Q9P1A6 1054 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 WDR35Q9P2L0 1181 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 TBK1Q9UHD2 729 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 STARD13Q9Y3M8 1113 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 RABGAP1Q9Y3P9 1069 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 USH1CQ9Y6N9 552 aa9.1□□□□□ -0.95
HPS4-206ENST00000439453 ADGRA3Q8IWK6 1321 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 BMP3P12645 472 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 EPHB2P29323 1055 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 FMO5P49326 533 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 PSMC6P62333 389 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ZNF543Q08ER8 600 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 MESDQ14696 234 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 MUM1Q2TAK8 710 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 MORN1Q5T089 497 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RHBDF2Q6PJF5 856 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 FAM186BQ8IYM0 893 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RBBP8NLQ8NC74 664 aaPredicted RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 SH3TC2Q8TF17 1288 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 SLC7A6OSQ96CW6 309 aaPredicted RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 VCXQ9H320 206 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 SLC38A10Q9HBR0 1119 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 DNAJC17Q9NVM6 304 aaKnown RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 LGALS13Q9UHV8 139 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RIPK3Q9Y572 518 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ALPK3Q96L96 1907 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 TCEA3O75764 348 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 GCNT3O95395 438 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 FTLP02792 175 aaPredicted RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 T-ENOLP0DO92 83 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 PSMC4P43686 418 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 KCNA1Q09470 495 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ARHGAP44Q17R89 818 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 IRGCQ6NXR0 463 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 PPP1R18Q6NYC8 613 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 AGPAT1Q99943 283 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 PAIP2Q9BPZ3 127 aaKnown RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 WNT8AQ9H1J5 351 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 NAALADL1Q9UQQ1 740 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 KIAA1217Q5T5P2 1943 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RSPH10B2B2RC85 870 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 MEIS1O00470 390 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ATP2A1O14983 1001 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 THAP12O43422 761 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ENTPD5O75356 428 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RSPH10BP0C881 870 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 KRT17Q04695 432 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 KIF22Q14807 665 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RNF220Q5VTB9 566 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ZNF449Q6P9G9 518 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 RNF207Q6ZRF8 634 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.09□□□□□ -0.95
HPS4-206ENST00000439453 C12orf50Q8NA57 414 aaPredicted RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 GTF3C2Q8WUA4 911 aaPredicted RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 FAM136AQ96C01 138 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ZNF333Q96JL9 665 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 TRIM4Q9C037 500 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 INTS2Q9H0H0 1204 aaKnown RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 DENND2DQ9H6A0 471 aaPredicted RBP9.09□□□□□ -0.95
HPS4-206ENST00000439453 GPCPD1Q9NPB8 672 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 ASIC3Q9UHC3 531 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 USP20Q9Y2K6 914 aa9.09□□□□□ -0.95
HPS4-206ENST00000439453 NVLO15381 856 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 DCTN3O75935 186 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 ITIH2P19823 946 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 PSMC2P35998 433 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 WDR4P57081 412 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 PRKCZQ05513 592 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 TCEAL1Q15170 157 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 ASPRV1Q53RT3 343 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 OR52E8Q6IFG1 317 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 CATSPER3Q86XQ3 398 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SYT2Q8N9I0 419 aaPredicted RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 GPRC5AQ8NFJ5 357 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SLC20A1Q8WUM9 679 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SPATC1LQ9H0A9 340 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 RANBP17Q9H2T7 1088 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 LRRC19Q9H756 370 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.08□□□□□ -0.96
HPS4-206ENST00000439453 FEM1BQ9UK73 627 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 PHTF1Q9UMS5 762 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 DNM3Q9UQ16 869 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 PTCH2Q9Y6C5 1203 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 PNMA6FA0A0J9YX94 578 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 TGFB1I1O43294 461 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 PPP1R11O60927 126 aaPredicted RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 LMNAP02545 664 aaKnown RBP9.08□□□□□ -0.96
HPS4-206ENST00000439453 RASSF2P50749 326 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 GPC5P78333 572 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 UCMAQ8WVF2 138 aa9.08□□□□□ -0.96
HPS4-206ENST00000439453 KIFAP3Q92845 792 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms