RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 TSNAXIP1Q2TAA8 658 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 TCP11X2Q5H9J9 407 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 KSR2Q6VAB6 950 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF793Q6ZN11 406 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 NYAP1Q6ZVC0 841 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM179Q6ZVK1 233 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 DHX32Q7L7V1 743 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 OTUD6AQ7L8S5 288 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 LEMD2Q8NC56 503 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RBBP8NLQ8NC74 664 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 GPR156Q8NFN8 814 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SH3RF3Q8TEJ3 882 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 EMID1Q96A84 441 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM167AQ96KS9 214 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 TMEM117Q9H0C3 514 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 LTB4R2Q9NPC1 389 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZDHHC4Q9NPG8 344 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 UCKL1Q9NWZ5 548 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJC28Q9NX36 388 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 TRPM5Q9NZQ8 1165 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ATXN2Q99700 1313 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 B4GALT3O60512 393 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 PSIP1O75475 530 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 OR12D1P0DN82 309 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 MBL2P11226 248 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 BMP3P12645 472 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ENGP17813 658 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 HOXC12P31275 282 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 UQCRC1P31930 480 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RHBDL3P58872 404 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 BDH1Q02338 343 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SNX17Q15036 470 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CEBPEQ15744 281 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 PROX2Q3B8N5 592 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM171A1Q5VUB5 890 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 HEPHL1Q6MZM0 1159 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKRD54Q6NXT1 300 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJB7Q7Z6W7 309 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF454Q8N9F8 522 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 HJURPQ8NCD3 748 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNJ9Q92806 393 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 BHMTQ93088 406 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 GPR174Q9BXC1 333 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 KCNJ16Q9NPI9 418 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 UXTQ9UBK9 157 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 METRNQ9UJH8 293 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 PPT2Q9UMR5 302 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 OSGIN2Q9Y236 505 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZFHX3Q15911 3703 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SYNMO15061 1565 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CYP2D7A0A087X1C5 515 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CDC14CA4D256 554 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKUB1A6NFN9 424 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 NT5C1B-RDH14C9J2C7 533 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 GCOM1H8Y6P7 765 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 HIP1O00291 1037 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 TNFSF14O43557 240 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SMPD2O60906 423 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM155BO75949 473 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 LRIG2O94898 1065 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 POU2F2P09086 479 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF806P0C7X5 589 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 POLR2MP0CAP2 368 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 MAOBP27338 520 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CDC25CP30307 473 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 OXTRP30559 389 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RAB27AP51159 221 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CEBPZQ03701 1054 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CHRNDQ07001 517 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 WASHC5Q12768 1159 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SEZ6Q53EL9 994 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 INTS5Q6P9B9 1019 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 DCP1BQ8IZD4 617 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC191Q8NCU4 936 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 BAHD1Q8TBE0 780 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 GIPC2Q8TF65 315 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 MRPS27Q92552 414 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 DNAJC1Q96KC8 554 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF578Q96N58 590 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RMDN3Q96TC7 470 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ASPSCR1Q9BZE9 553 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 UBA5Q9GZZ9 404 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 SPRTNQ9H040 489 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 PCDH12Q9NPG4 1184 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 HEBP1Q9NRV9 189 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNHIT6Q9NWK9 470 aaKnown RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ADAMTS1Q9UHI8 967 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 ZMYM5Q9UJ78 669 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RTL9Q8NET4 1388 aa2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 RPAP1Q9BWH6 1393 aaPredicted RBP2.96□□□□□ -1.94
CCDC88A-205ENST00000426576 GLI2P10070 1586 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ALPK2Q86TB3 2170 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 DRGXA6NNA5 263 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 METTL12A8MUP2 240 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 H3BNC9 293 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 APAF1O14727 1248 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 BCAT2O15382 392 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 KDM1AO60341 852 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CYP2E1P05181 493 aaPredicted RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms