RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RAD9BQ6WBX8 426 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 ZNF598Q86UK7 904 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 MMS19Q96T76 1030 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 HAUS4Q9H6D7 363 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 ELAC1Q9H777 363 aaKnown RBP18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 VRTNQ9H8Y1 702 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 ARHGAP20Q9P2F6 1191 aa18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 EPN1Q9Y6I3 576 aaPredicted RBP18.35■□□□□ 0.53
CCDC28B-202ENST00000421922 TET1Q8NFU7 2136 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 RBAK-RBAKDNI3L0D1 243 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 ENPP3O14638 875 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 KIAA0355O15063 1070 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 NDUFA10O95299 355 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 POMCP01189 267 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 CCDC175P0C221 793 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 CD58P19256 250 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 ANXA13P27216 316 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 TAF6P49848 677 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 KIF11P52732 1056 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 KRT83P78385 493 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 FAM189BP81408 668 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 MAPK8IP2Q13387 824 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 IKBKEQ14164 716 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 MTF1Q14872 753 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 IRF2BP2Q7Z5L9 587 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 RTN4RL1Q86UN2 441 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 FAM71AQ8IYT1 594 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 RPUSD2Q8IZ73 545 aaKnown RBP18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 TXLNBQ8N3L3 684 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 TTC39CQ8N584 583 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 KIAA1524Q8TCG1 905 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 FAM193BQ96PV7 902 aaPredicted RBP18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 ARID3AQ99856 593 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 GPR88Q9GZN0 384 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 DNAI2Q9GZS0 605 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 CYP3A43Q9HB55 503 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 SEPT11Q9NVA2 429 aaKnown RBP18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 POLIQ9UNA4 740 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 SCN1AP35498 2009 aa18.34■□□□□ 0.53
CCDC28B-202ENST00000421922 PLEKP08567 350 aaPredicted RBP18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 LRPAP1P30533 357 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 PTK2Q05397 1052 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 RNASELQ05823 741 aaKnown RBP18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 GPNMBQ14956 572 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 HGSNATQ68CP4 663 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 TMEM270Q6UE05 265 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 TOGARAM2Q6ZUX3 1019 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 DESI2Q9BSY9 194 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 GOLGA2P5Q9HBQ8 144 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 KANSL3Q9P2N6 904 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 BRCA2P51587 3418 aa18.33■□□□□ 0.53
CCDC28B-202ENST00000421922 ANO9A1A5B4 782 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 CYP26A1O43174 497 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 PFKMP08237 780 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 RPL9P32969 192 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 ASPAP45381 313 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 NOMO2Q5JPE7 1267 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 SMYD5Q6GMV2 418 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 KIAA1328Q86T90 577 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 RBBP8NLQ8NC74 664 aaPredicted RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 CXorf38Q8TB03 319 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 DDX27Q96GQ7 796 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 UROC1Q96N76 676 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 CISHQ9NSE2 258 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 SNX9Q9Y5X1 595 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 EIF3CLB5ME19 914 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 PODXLO00592 558 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 PIRO00625 290 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 EFCAB14O75071 495 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 WEE2P0C1S8 567 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 TNFAIP3P21580 790 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 SOX4Q06945 474 aaPredicted RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 TUSC3Q13454 348 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 MFSD5Q6N075 450 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 NPAS4Q8IUM7 802 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 TMEM130Q8N3G9 435 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 RSPH1Q8WYR4 309 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 EIF3CQ99613 913 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 BCO2Q9BYV7 579 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 PDCL3Q9H2J4 239 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 FAM124BQ9H5Z6 455 aaPredicted RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 SMYD3Q9H7B4 428 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 SPTLC3Q9NUV7 552 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 PUF60Q9UHX1 559 aaKnown RBP18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 PPP2R2CQ9Y2T4 447 aa18.32■□□□□ 0.52
CCDC28B-202ENST00000421922 TRIM43BA6NCK2 446 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 GOLGA6L9A6NEM1 432 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 CASTOR2A6NHX0 329 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 PPEF2O14830 753 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 FGFR1P11362 822 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 RAP1GAPP47736 663 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 BMS1Q14692 1282 aaKnown RBP18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 SCARA3Q6AZY7 606 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 ZNF571Q7Z3V5 609 aaPredicted RBP18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 UBE2Q1Q7Z7E8 422 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 ACRBPQ8NEB7 543 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 GSTCDQ8NEC7 633 aa18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 TRIM43Q96BQ3 446 aaPredicted RBP18.31■□□□□ 0.52
CCDC28B-202ENST00000421922 HTATIP2Q9BUP3 242 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms