RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 GOLGA6L1Q8N7Z2 621 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 PCYOX1Q9UHG3 505 aa21.45■■□□□ 1.02
USP39-204ENST00000409766 COL1A2P08123 1366 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 A0A087WZ62 844 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 GPR25O00155 361 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 PTGIRP43119 386 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 C1QBPQ07021 282 aaKnown RBP21.44■■□□□ 1.02
USP39-204ENST00000409766 PPFIA1Q13136 1202 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 MAMLD1Q13495 774 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 GRB14Q14449 540 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 SIX1Q15475 284 aaPredicted RBP21.44■■□□□ 1.02
USP39-204ENST00000409766 PLEKHA7Q6IQ23 1121 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 ANKRD36BP1Q96IX9 119 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 FDXACB1Q9BRP7 624 aaPredicted RBP21.44■■□□□ 1.02
USP39-204ENST00000409766 DPH5Q9H2P9 285 aa21.44■■□□□ 1.02
USP39-204ENST00000409766 GOLGA6CA6NDK9 693 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 IL18RAPO95256 599 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 TNNC2P02585 160 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 GOLGA6DP0CG33 693 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 CXCL8P10145 99 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 CD58P19256 250 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 ZNF699Q32M78 642 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 MMS22LQ6ZRQ5 1243 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 DPP9Q86TI2 863 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 JAMLQ86YT9 394 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 CD302Q8IX05 232 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 MAGOHBQ96A72 148 aaKnown RBP21.43■■□□□ 1.02
USP39-204ENST00000409766 RPF1Q9H9Y2 349 aaKnown RBP21.43■■□□□ 1.02
USP39-204ENST00000409766 GBA2Q9HCG7 927 aaPredicted RBP21.43■■□□□ 1.02
USP39-204ENST00000409766 MRPL47Q9HD33 250 aaKnown RBP21.43■■□□□ 1.02
USP39-204ENST00000409766 GOLGA6AQ9NYA3 693 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 CSDE1O75534 798 aaKnown RBP21.43■■□□□ 1.02
USP39-204ENST00000409766 PROSCO94903 275 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 KRT14P02533 472 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 FLT3P36888 993 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 ASPAP45381 313 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 SMYD5Q6GMV2 418 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 TTC27Q6P3X3 843 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 LRRC45Q96CN5 670 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 MAML3Q96JK9 1138 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 MTUS1Q9ULD2 1270 aa21.43■■□□□ 1.02
USP39-204ENST00000409766 H3BRB1 525 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 RARAP10276 462 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 MMP8P22894 467 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 HSD17B3P37058 310 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 DRG2P55039 364 aaKnown RBP21.42■■□□□ 1.02
USP39-204ENST00000409766 TTMPQ5BVD1 217 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 MTHFD1LQ6UB35 978 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 ARL8AQ96BM9 186 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 PTPN18Q99952 460 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 PLVAPQ9BX97 442 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 TRIM31Q9BZY9 425 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 TUT1Q9H6E5 874 aaKnown RBP21.42■■□□□ 1.02
USP39-204ENST00000409766 PRDM4Q9UKN5 801 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 AKT3Q9Y243 479 aa21.42■■□□□ 1.02
USP39-204ENST00000409766 FSCN2O14926 492 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 VTNP04004 478 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 WEE2P0C1S8 567 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 MCF2P10911 925 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 SMPD1P17405 629 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 TMOD1P28289 359 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 UAP1Q16222 522 aaPredicted RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 DUSP28Q4G0W2 176 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 SPRYD7Q5W111 196 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 CCDC137Q6PK04 289 aaKnown RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 PPP1R16BQ96T49 567 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 SCINQ9Y6U3 715 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 ERICH4A6NGS2 130 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 MEFVO15553 781 aaPredicted RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 LSM8O95777 96 aaKnown RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 STAG3L1P0CL83 205 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 HOXD8P13378 290 aaPredicted RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 FAM110CQ1W6H9 321 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 ZNF394Q53GI3 561 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 C12orf50Q8NA57 414 aaPredicted RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 FAM76AQ8TAV0 307 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 DDX27Q96GQ7 796 aaKnown RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 PARK7Q99497 189 aaKnown RBP21.41■■□□□ 1.02
USP39-204ENST00000409766 ZMYND15Q9H091 742 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 PDZD7Q9H5P4 517 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 ZDHHC18Q9NUE0 388 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 SIX4Q9UIU6 781 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 RASAL2Q9UJF2 1139 aa21.41■■□□□ 1.02
USP39-204ENST00000409766 LACTBL1A8MY62 500 aa21.4■■□□□ 1.02
USP39-204ENST00000409766 BRD2P25440 801 aaKnown RBP21.4■■□□□ 1.02
USP39-204ENST00000409766 TNFAIP2Q03169 654 aa21.4■■□□□ 1.02
USP39-204ENST00000409766 TMC3Q7Z5M5 1100 aa21.4■■□□□ 1.02
USP39-204ENST00000409766 TINF2Q9BSI4 451 aa21.4■■□□□ 1.02
USP39-204ENST00000409766 PARVAQ9NVD7 372 aa21.4■■□□□ 1.02
USP39-204ENST00000409766 PLAAQ9Y263 795 aa21.4■■□□□ 1.02
USP39-204ENST00000409766 SBDSQ9Y3A5 250 aaKnown RBP eCLIP21.4■■□□□ 1.02
USP39-204ENST00000409766 PODXLO00592 558 aa21.39■■□□□ 1.02
USP39-204ENST00000409766 NFICP08651 508 aa21.39■■□□□ 1.02
USP39-204ENST00000409766 ARF4P18085 180 aaPredicted RBP21.39■■□□□ 1.02
USP39-204ENST00000409766 COILP38432 576 aaPredicted RBP21.39■■□□□ 1.02
USP39-204ENST00000409766 MARCH8Q5T0T0 291 aa21.39■■□□□ 1.02
USP39-204ENST00000409766 SCARA5Q6ZMJ2 495 aa21.39■■□□□ 1.02
USP39-204ENST00000409766 PLEKHH3Q7Z736 793 aa21.39■■□□□ 1.02
USP39-204ENST00000409766 C1orf127Q8N9H9 656 aa21.39■■□□□ 1.02
USP39-204ENST00000409766 CPB2Q96IY4 423 aa21.39■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms