RNA–Protein interactions for RNA: ENST00000361866.7

COL6A1-201, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL6A1, Length 4,238 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-201ENST00000361866 MAGEB18Q96M61 343 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 RANBP17Q9H2T7 1088 aaKnown RBP14.65□□□□□ -0.06
COL6A1-201ENST00000361866 MANSC1Q9H8J5 431 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 TMEM8AQ9HCN3 771 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 SLCO1B3Q9NPD5 702 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 LRRC4BQ9NT99 713 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 RNF146Q9NTX7 359 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 XPO7Q9UIA9 1087 aaKnown RBP14.65□□□□□ -0.06
COL6A1-201ENST00000361866 MST1RQ04912 1400 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 ATRNO75882 1429 aa14.65□□□□□ -0.06
COL6A1-201ENST00000361866 YY1P25490 414 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 SREBF1P36956 1147 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 SNX16P57768 344 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 ENOSF1Q7L5Y1 443 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 PALB2Q86YC2 1186 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 LRGUKQ96M69 825 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 BCAP29Q9UHQ4 241 aa14.65□□□□□ -0.07
COL6A1-201ENST00000361866 SLITRK3O94933 977 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 ZSCAN5DPP0CG00 497 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 MX2P20592 715 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 PRKCIP41743 596 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 ART3Q13508 389 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 WDR72Q3MJ13 1102 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 PCNX4Q63HM2 1172 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 SLFN12LQ6IEE8 588 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 NOP9Q86U38 636 aaKnown RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 EXOC3L1Q86VI1 746 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 CEP120Q8N960 986 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 FAM71DQ8N9W8 422 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 SPDYE1Q8NFV5 336 aaPredicted RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 TRIM56Q9BRZ2 755 aaKnown RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 KCTD10Q9H3F6 313 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 PCMTD2Q9NV79 361 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 ZHX2Q9Y6X8 837 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 KRT7P08729 469 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 KCNV1Q6PIU1 500 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 NLRP7Q8WX94 980 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 CNOT7Q9UIV1 285 aaKnown RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 A8MUI8 341 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 MED7O43513 233 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 GARSP41250 739 aaKnown RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 SESN2P58004 480 aaPredicted RBP14.64□□□□□ -0.07
COL6A1-201ENST00000361866 PPP3CAQ08209 521 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 DUPD1Q68J44 220 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 SV2AQ7L0J3 742 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 ZFPM1Q8IX07 1006 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 RCOR2Q8IZ40 523 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 ZNF384Q8TF68 577 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 MIS12Q9H081 205 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 C10orf88Q9H8K7 445 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 OLFML3Q9NRN5 406 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 ZFATQ9P243 1243 aa14.64□□□□□ -0.07
COL6A1-201ENST00000361866 GTPBP10A4D1E9 387 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 M0QYV0 167 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 CES2O00748 559 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 KIF3CO14782 793 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 DNAJC8O75937 253 aaPredicted RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 GSTA2P09210 222 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 SHMT1P34896 483 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 RFC1P35251 1148 aaPredicted RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 MRPS35P82673 323 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 NCOA4Q13772 614 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 TFDP2Q14188 446 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 PKN2Q16513 984 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 ARSHQ5FYA8 562 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 SLC10A5Q5PT55 438 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 KRT80Q6KB66 452 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 CCDC33Q8N5R6 958 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 TARS2Q9BW92 718 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 BCAS3Q9H6U6 928 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 NINJ2Q9NZG7 142 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 WHRNQ9P202 907 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 GH1P01241 217 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 GZMAP12544 262 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 SSTR1P30872 391 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 GTF2H1P32780 548 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 ROR1Q01973 937 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 SNRNP48Q6IEG0 339 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 C1orf131Q8NDD1 294 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 SPATA18Q8TC71 538 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 SLC38A10Q9HBR0 1119 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 AKT3Q9Y243 479 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 TNS2Q63HR2 1409 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 POLRMTO00411 1230 aaKnown RBP14.63□□□□□ -0.07
COL6A1-201ENST00000361866 KCNN4O15554 427 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 KRT16P08779 473 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 HSP90AA5PQ58FG0 334 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 MROH9Q5TGP6 573 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 HES6Q96HZ4 224 aa14.63□□□□□ -0.07
COL6A1-201ENST00000361866 CCDC78A2IDD5 438 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 LDHAP00338 332 aaKnown RBP14.62□□□□□ -0.07
COL6A1-201ENST00000361866 CHKAP35790 457 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 ORC1Q13415 861 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 TNFAIP1Q13829 316 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 SEPT6Q14141 434 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 SP8Q8IXZ3 490 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 TRIML2Q8N7C3 387 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 NSL1Q96IY1 281 aa14.62□□□□□ -0.07
COL6A1-201ENST00000361866 MXRA8Q9BRK3 442 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms