RNA–Protein interactions for RNA: ENST00000578317.5

COPS3-215, Transcript of COP9 signalosome subunit 3, human

TSL 2

Gene COPS3, Length 1,625 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS3-215	ENST00000578317	CCDC61	Q9Y6R9	512 aa		11.79	□□□□□ -0.52
COPS3-215	ENST00000578317	GCC2	Q8IWJ2	1684 aa		11.79	□□□□□ -0.52
COPS3-215	ENST00000578317	DIP2C	Q9Y2E4	1556 aa		11.79	□□□□□ -0.52
COPS3-215	ENST00000578317	NUP155	O75694	1391 aa		11.79	□□□□□ -0.52
COPS3-215	ENST00000578317	AGL	P35573	1532 aa		11.78	□□□□□ -0.52
COPS3-215	ENST00000578317	ABCA6	Q8N139	1617 aa		11.78	□□□□□ -0.52
COPS3-215	ENST00000578317	CLSPN	Q9HAW4	1339 aa		11.77	□□□□□ -0.53
COPS3-215	ENST00000578317	DHX57	Q6P158	1386 aa	Known RBP	11.76	□□□□□ -0.53
COPS3-215	ENST00000578317	SIGLEC1	Q9BZZ2	1709 aa		11.76	□□□□□ -0.53
COPS3-215	ENST00000578317	GGT6	Q6P531	493 aa		11.75	□□□□□ -0.53
COPS3-215	ENST00000578317	KANK1	Q14678	1352 aa		11.75	□□□□□ -0.53
COPS3-215	ENST00000578317	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.75	□□□□□ -0.53
COPS3-215	ENST00000578317	RIOK3	O14730	519 aa	Known RBP	11.75	□□□□□ -0.53
COPS3-215	ENST00000578317	TPRN	Q4KMQ1	711 aa		11.75	□□□□□ -0.53
COPS3-215	ENST00000578317	KDM5D	Q9BY66	1539 aa		11.74	□□□□□ -0.53
COPS3-215	ENST00000578317	CCER1	Q8TC90	406 aa	Predicted RBP	11.74	□□□□□ -0.53
COPS3-215	ENST00000578317	PZP	P20742	1482 aa		11.73	□□□□□ -0.53
COPS3-215	ENST00000578317	WASHC2C	Q9Y4E1	1318 aa		11.73	□□□□□ -0.53
COPS3-215	ENST00000578317	BCORL1	Q5H9F3	1711 aa		11.72	□□□□□ -0.53
COPS3-215	ENST00000578317	UNC13B	O14795	1591 aa		11.71	□□□□□ -0.53
COPS3-215	ENST00000578317	VWDE	Q8N2E2	1590 aa		11.71	□□□□□ -0.53
COPS3-215	ENST00000578317	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.71	□□□□□ -0.53
COPS3-215	ENST00000578317	DEPDC5	O75140	1603 aa		11.7	□□□□□ -0.54
COPS3-215	ENST00000578317	PRDM15	P57071	1507 aa	Predicted RBP	11.7	□□□□□ -0.54
COPS3-215	ENST00000578317	LMTK2	Q8IWU2	1503 aa		11.7	□□□□□ -0.54
COPS3-215	ENST00000578317	CD44	P16070	742 aa	Known RBP	11.7	□□□□□ -0.54
COPS3-215	ENST00000578317	RNF17	Q9BXT8	1623 aa	Known RBP	11.7	□□□□□ -0.54
COPS3-215	ENST00000578317	FAM135A	Q9P2D6	1515 aa		11.69	□□□□□ -0.54
COPS3-215	ENST00000578317	MROH1	Q8NDA8	1641 aa		11.68	□□□□□ -0.54
COPS3-215	ENST00000578317	ANKRD30B	Q9BXX2	1392 aa		11.68	□□□□□ -0.54
COPS3-215	ENST00000578317	PAK3	O75914	559 aa	Predicted RBP	11.68	□□□□□ -0.54
COPS3-215	ENST00000578317	ARHGAP31	Q2M1Z3	1444 aa		11.67	□□□□□ -0.54
COPS3-215	ENST00000578317	C19orf67	A6NJJ6	358 aa		11.67	□□□□□ -0.54
COPS3-215	ENST00000578317	MLEC	Q14165	292 aa		11.67	□□□□□ -0.54
COPS3-215	ENST00000578317	IQGAP3	Q86VI3	1631 aa		11.67	□□□□□ -0.54
COPS3-215	ENST00000578317	VGF	O15240	615 aa	Predicted RBP	11.66	□□□□□ -0.54
COPS3-215	ENST00000578317	ESF1	Q9H501	851 aa	Known RBP	11.66	□□□□□ -0.54
COPS3-215	ENST00000578317	ZRANB1	Q9UGI0	708 aa		11.66	□□□□□ -0.54
COPS3-215	ENST00000578317	RPRD2	Q5VT52	1461 aa	Known RBP	11.65	□□□□□ -0.54
COPS3-215	ENST00000578317	ABCC3	O15438	1527 aa		11.65	□□□□□ -0.54
COPS3-215	ENST00000578317	CNTLN	Q9NXG0	1405 aa		11.65	□□□□□ -0.55
COPS3-215	ENST00000578317	NBR1	Q14596	966 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	NKX1-1	Q15270	411 aa	Predicted RBP	11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	KIF12	Q96FN5	646 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	TIMELESS	Q9UNS1	1208 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	PTPRT	O14522	1441 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	SGIP1	Q9BQI5	828 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	PCDHB8	Q9UN66	801 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	PCDHB13	Q9Y5F0	798 aa		11.64	□□□□□ -0.55
COPS3-215	ENST00000578317	ZMYM3	Q14202	1370 aa		11.63	□□□□□ -0.55
COPS3-215	ENST00000578317	NPAT	Q14207	1427 aa		11.63	□□□□□ -0.55
COPS3-215	ENST00000578317	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	11.63	□□□□□ -0.55
COPS3-215	ENST00000578317	STK25	O00506	426 aa		11.63	□□□□□ -0.55
COPS3-215	ENST00000578317	ZFP91	Q96JP5	570 aa	Predicted RBP	11.63	□□□□□ -0.55
COPS3-215	ENST00000578317	PLA2R1	Q13018	1463 aa		11.62	□□□□□ -0.55
COPS3-215	ENST00000578317	MAP3K13	O43283	966 aa		11.62	□□□□□ -0.55
COPS3-215	ENST00000578317	ZEB1	P37275	1124 aa	Predicted RBP	11.62	□□□□□ -0.55
COPS3-215	ENST00000578317	PHF12	Q96QT6	1004 aa		11.62	□□□□□ -0.55
COPS3-215	ENST00000578317	ADAMTSL3	P82987	1691 aa		11.62	□□□□□ -0.55
COPS3-215	ENST00000578317	KDM4F	A0A1W2PPD8	638 aa		11.61	□□□□□ -0.55
COPS3-215	ENST00000578317	SIN3A	Q96ST3	1273 aa		11.61	□□□□□ -0.55
COPS3-215	ENST00000578317	GTPBP6	O43824	516 aa	Predicted RBP	11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	NOS1	P29475	1434 aa		11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	EFCAB6	Q5THR3	1501 aa		11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	ZNF467	Q7Z7K2	595 aa	Predicted RBP	11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	SLC52A1	Q9NWF4	448 aa		11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	TET3	O43151	1660 aa		11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	MADD	Q8WXG6	1647 aa		11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	IFNL1	Q8IU54	200 aa		11.6	□□□□□ -0.55
COPS3-215	ENST00000578317	ZNF579	Q8NAF0	562 aa	Known RBP	11.59	□□□□□ -0.55
COPS3-215	ENST00000578317	ZC3H13	Q5T200	1668 aa	Known RBP	11.59	□□□□□ -0.55
COPS3-215	ENST00000578317	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.58	□□□□□ -0.56
COPS3-215	ENST00000578317	NEUROD1	Q13562	356 aa		11.57	□□□□□ -0.56
COPS3-215	ENST00000578317	CCDC144A	A2RUR9	1427 aa		11.57	□□□□□ -0.56
COPS3-215	ENST00000578317	BCL11B	Q9C0K0	894 aa	Predicted RBP	11.57	□□□□□ -0.56
COPS3-215	ENST00000578317	FER1L4	A9Z1Z3	1794 aa		11.57	□□□□□ -0.56
COPS3-215	ENST00000578317	EVX2	Q03828	476 aa		11.56	□□□□□ -0.56
COPS3-215	ENST00000578317	RIMS1	Q86UR5	1692 aa	Known RBP	11.55	□□□□□ -0.56
COPS3-215	ENST00000578317	IDI1	Q13907	227 aa		11.55	□□□□□ -0.56
COPS3-215	ENST00000578317	STAC3	Q96MF2	364 aa		11.55	□□□□□ -0.56
COPS3-215	ENST00000578317	TRPM2	O94759	1503 aa		11.55	□□□□□ -0.56
COPS3-215	ENST00000578317		E9PCH4	1651 aa		11.54	□□□□□ -0.56
COPS3-215	ENST00000578317	ERVK-7	P63135	1459 aa		11.54	□□□□□ -0.56
COPS3-215	ENST00000578317	RYDEN	Q9NUL5	291 aa	Known RBP	11.54	□□□□□ -0.56
COPS3-215	ENST00000578317	CAMSAP1	Q5T5Y3	1602 aa		11.54	□□□□□ -0.56
COPS3-215	ENST00000578317	CEBPA	P49715	358 aa	Predicted RBP	11.53	□□□□□ -0.56
COPS3-215	ENST00000578317	PDAP1	Q13442	181 aa	Known RBP	11.53	□□□□□ -0.56
COPS3-215	ENST00000578317	STK24	Q9Y6E0	443 aa		11.53	□□□□□ -0.56
COPS3-215	ENST00000578317	CLTC	Q00610	1675 aa	Known RBP	11.53	□□□□□ -0.56
COPS3-215	ENST00000578317	PTPRM	P28827	1452 aa		11.52	□□□□□ -0.56
COPS3-215	ENST00000578317	SPATA31D1	Q6ZQQ2	1576 aa		11.52	□□□□□ -0.56
COPS3-215	ENST00000578317	PPP1R15A	O75807	674 aa	Predicted RBP	11.52	□□□□□ -0.57
COPS3-215	ENST00000578317	L3MBTL2	Q969R5	705 aa		11.52	□□□□□ -0.57
COPS3-215	ENST00000578317	CEP152	O94986	1710 aa		11.52	□□□□□ -0.57
COPS3-215	ENST00000578317	TNR	Q92752	1358 aa		11.52	□□□□□ -0.57
COPS3-215	ENST00000578317	MROH2A	A6NES4	1674 aa		11.51	□□□□□ -0.57
COPS3-215	ENST00000578317	SPATA31E1	Q6ZUB1	1445 aa		11.51	□□□□□ -0.57
COPS3-215	ENST00000578317	TONSL	Q96HA7	1378 aa		11.51	□□□□□ -0.57
COPS3-215	ENST00000578317	C3	P01024	1663 aa		11.5	□□□□□ -0.57
COPS3-215	ENST00000578317	NEURL4	Q96JN8	1562 aa		11.5	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms