RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 RNF123Q5XPI4 1314 aa16.1■□□□□ 0.17
CIITA-209ENST00000573309 COL17A1Q9UMD9 1497 aaPredicted RBP16.1■□□□□ 0.17
CIITA-209ENST00000573309 PRDM15P57071 1507 aaPredicted RBP16.1■□□□□ 0.17
CIITA-209ENST00000573309 UNC13BO14795 1591 aa16.09■□□□□ 0.17
CIITA-209ENST00000573309 NUDCQ9Y266 331 aa16.09■□□□□ 0.17
CIITA-209ENST00000573309 E9PCH4 1651 aa16.09■□□□□ 0.17
CIITA-209ENST00000573309 RALGAPBQ86X10 1494 aa16.09■□□□□ 0.17
CIITA-209ENST00000573309 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.08■□□□□ 0.17
CIITA-209ENST00000573309 NPM2Q86SE8 214 aaKnown RBP16.08■□□□□ 0.16
CIITA-209ENST00000573309 LAS1LQ9Y4W2 734 aaKnown RBP16.07■□□□□ 0.16
CIITA-209ENST00000573309 IQGAP3Q86VI3 1631 aa16.07■□□□□ 0.16
CIITA-209ENST00000573309 INO80Q9ULG1 1556 aaPredicted RBP16.07■□□□□ 0.16
CIITA-209ENST00000573309 NUTM2FA1L443 756 aa16.07■□□□□ 0.16
CIITA-209ENST00000573309 UHRF1BP1Q6BDS2 1440 aa16.06■□□□□ 0.16
CIITA-209ENST00000573309 ARAP3Q8WWN8 1544 aa16.05■□□□□ 0.16
CIITA-209ENST00000573309 CLTCL1P53675 1640 aa16.04■□□□□ 0.16
CIITA-209ENST00000573309 MINK1Q8N4C8 1332 aaPredicted RBP16.04■□□□□ 0.16
CIITA-209ENST00000573309 ABCA6Q8N139 1617 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 FRMPD1Q5SYB0 1578 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 NEFMP07197 916 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 SLC12A5Q9H2X9 1139 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 CABP2Q9NPB3 220 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 MLH3Q9UHC1 1453 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 KNSTRNQ9Y448 316 aa16.03■□□□□ 0.16
CIITA-209ENST00000573309 CEP152O94986 1710 aa16.02■□□□□ 0.15
CIITA-209ENST00000573309 KDM5CP41229 1560 aa16.02■□□□□ 0.15
CIITA-209ENST00000573309 NEO1Q92859 1461 aa16.01■□□□□ 0.15
CIITA-209ENST00000573309 HECW2Q9P2P5 1572 aa16.01■□□□□ 0.15
CIITA-209ENST00000573309 MAGI2Q86UL8 1455 aa16.01■□□□□ 0.15
CIITA-209ENST00000573309 POGKQ9P215 609 aa16■□□□□ 0.15
CIITA-209ENST00000573309 PLEKHG5O94827 1062 aa15.99■□□□□ 0.15
CIITA-209ENST00000573309 WAPLQ7Z5K2 1190 aa15.99■□□□□ 0.15
CIITA-209ENST00000573309 PTPRTO14522 1441 aa15.99■□□□□ 0.15
CIITA-209ENST00000573309 SRPK2P78362 688 aaKnown RBP15.99■□□□□ 0.15
CIITA-209ENST00000573309 MROH1Q8NDA8 1641 aa15.99■□□□□ 0.15
CIITA-209ENST00000573309 PPRC1Q5VV67 1664 aaKnown RBP15.98■□□□□ 0.15
CIITA-209ENST00000573309 DIP2BQ9P265 1576 aa15.97■□□□□ 0.15
CIITA-209ENST00000573309 VGFO15240 615 aaPredicted RBP15.96■□□□□ 0.15
CIITA-209ENST00000573309 PDE4AP27815 886 aa15.96■□□□□ 0.15
CIITA-209ENST00000573309 CENPJQ9HC77 1338 aaPredicted RBP15.96■□□□□ 0.15
CIITA-209ENST00000573309 RBM33Q96EV2 1170 aaKnown RBP15.96■□□□□ 0.15
CIITA-209ENST00000573309 DIP2CQ9Y2E4 1556 aa15.95■□□□□ 0.14
CIITA-209ENST00000573309 PER1O15534 1290 aaPredicted RBP15.95■□□□□ 0.14
CIITA-209ENST00000573309 EXOC6Q8TAG9 804 aa15.95■□□□□ 0.14
CIITA-209ENST00000573309 TRPM2O94759 1503 aa15.95■□□□□ 0.14
CIITA-209ENST00000573309 PRAM1Q96QH2 718 aa15.95■□□□□ 0.14
CIITA-209ENST00000573309 CCDC146Q8IYE0 955 aa15.95■□□□□ 0.14
CIITA-209ENST00000573309 SLC26A8Q96RN1 970 aa15.95■□□□□ 0.14
CIITA-209ENST00000573309 ABCC3O15438 1527 aa15.94■□□□□ 0.14
CIITA-209ENST00000573309 BRPF3Q9ULD4 1205 aa15.94■□□□□ 0.14
CIITA-209ENST00000573309 KTN1Q86UP2 1357 aaKnown RBP15.94■□□□□ 0.14
CIITA-209ENST00000573309 FBLN1P23142 703 aa15.93■□□□□ 0.14
CIITA-209ENST00000573309 EFCAB6Q5THR3 1501 aa15.93■□□□□ 0.14
CIITA-209ENST00000573309 USP35Q9P2H5 1018 aa15.93■□□□□ 0.14
CIITA-209ENST00000573309 TXNDC2Q86VQ3 553 aa15.93■□□□□ 0.14
CIITA-209ENST00000573309 PNISRQ8TF01 805 aaKnown RBP15.92■□□□□ 0.14
CIITA-209ENST00000573309 BACH2Q9BYV9 841 aa15.92■□□□□ 0.14
CIITA-209ENST00000573309 C14orf93Q9H972 538 aaKnown RBP15.92■□□□□ 0.14
CIITA-209ENST00000573309 TET3O43151 1660 aa15.92■□□□□ 0.14
CIITA-209ENST00000573309 SPHKAPQ2M3C7 1700 aa15.92■□□□□ 0.14
CIITA-209ENST00000573309 NEUROD2Q15784 382 aa15.92■□□□□ 0.14
CIITA-209ENST00000573309 NCKAP5LQ9HCH0 1330 aa15.92■□□□□ 0.14
CIITA-209ENST00000573309 TRPM1Q7Z4N2 1603 aa15.91■□□□□ 0.14
CIITA-209ENST00000573309 TCERG1O14776 1098 aaKnown RBP15.91■□□□□ 0.14
CIITA-209ENST00000573309 CARD14Q9BXL6 1004 aa15.91■□□□□ 0.14
CIITA-209ENST00000573309 POLR1AO95602 1720 aaPredicted RBP15.9■□□□□ 0.14
CIITA-209ENST00000573309 SLC52A1Q9NWF4 448 aa15.9■□□□□ 0.14
CIITA-209ENST00000573309 MYBBP1AQ9BQG0 1328 aaKnown RBP15.9■□□□□ 0.14
CIITA-209ENST00000573309 GPRASP1Q5JY77 1395 aa15.9■□□□□ 0.14
CIITA-209ENST00000573309 RNF17Q9BXT8 1623 aaKnown RBP15.9■□□□□ 0.14
CIITA-209ENST00000573309 RRP1P56182 461 aaKnown RBP15.9■□□□□ 0.14
CIITA-209ENST00000573309 MAP3K4Q9Y6R4 1608 aa15.89■□□□□ 0.13
CIITA-209ENST00000573309 PPM1GO15355 546 aaPredicted RBP15.89■□□□□ 0.13
CIITA-209ENST00000573309 SKAP1Q86WV1 359 aa15.89■□□□□ 0.13
CIITA-209ENST00000573309 SOX12O15370 315 aa15.89■□□□□ 0.13
CIITA-209ENST00000573309 SCAF11Q99590 1463 aaKnown RBP15.89■□□□□ 0.13
CIITA-209ENST00000573309 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.89■□□□□ 0.13
CIITA-209ENST00000573309 CDCA7LQ96GN5 454 aa15.88■□□□□ 0.13
CIITA-209ENST00000573309 ZMYM3Q14202 1370 aa15.88■□□□□ 0.13
CIITA-209ENST00000573309 DEPDC5O75140 1603 aa15.87■□□□□ 0.13
CIITA-209ENST00000573309 NLRP13Q86W25 1043 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 VWDEQ8N2E2 1590 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 CFAP74Q9C0B2 1584 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 ADAMTS8Q9UP79 889 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 RICTORQ6R327 1708 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 RALBP1Q15311 655 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 GGNBP2Q9H3C7 697 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 MROH2AA6NES4 1674 aa15.86■□□□□ 0.13
CIITA-209ENST00000573309 CDCA8Q53HL2 280 aa15.85■□□□□ 0.13
CIITA-209ENST00000573309 EIF3AQ14152 1382 aaKnown RBP15.85■□□□□ 0.13
CIITA-209ENST00000573309 PPP2R1AP30153 589 aa15.84■□□□□ 0.13
CIITA-209ENST00000573309 MADDQ8WXG6 1647 aa15.84■□□□□ 0.13
CIITA-209ENST00000573309 UBE2Q2Q8WVN8 375 aa15.84■□□□□ 0.13
CIITA-209ENST00000573309 GSE1Q14687 1217 aa15.83■□□□□ 0.13
CIITA-209ENST00000573309 WDR43Q15061 677 aaKnown RBP eCLIP15.83■□□□□ 0.13
CIITA-209ENST00000573309 AMER1Q5JTC6 1135 aaPredicted RBP15.83■□□□□ 0.13
CIITA-209ENST00000573309 MORC1Q86VD1 984 aa15.83■□□□□ 0.13
CIITA-209ENST00000573309 RRP7AQ9Y3A4 280 aaKnown RBP15.83■□□□□ 0.13
CIITA-209ENST00000573309 SIGLEC1Q9BZZ2 1709 aa15.83■□□□□ 0.13
CIITA-209ENST00000573309 SLC4A3P48751 1232 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms