RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 MROH1Q8NDA8 1641 aa9.74□□□□□ -0.85
NUP88-206ENST00000573169 RNF17Q9BXT8 1623 aaKnown RBP9.74□□□□□ -0.85
NUP88-206ENST00000573169 ABCC5O15440 1437 aa9.73□□□□□ -0.85
NUP88-206ENST00000573169 FAM135AQ9P2D6 1515 aa9.73□□□□□ -0.85
NUP88-206ENST00000573169 MIER1Q8N108 512 aa9.73□□□□□ -0.85
NUP88-206ENST00000573169 KLHL34Q8N239 644 aa9.73□□□□□ -0.85
NUP88-206ENST00000573169 CHIC2Q9UKJ5 165 aa9.73□□□□□ -0.85
NUP88-206ENST00000573169 DISP3Q9P2K9 1392 aa9.73□□□□□ -0.85
NUP88-206ENST00000573169 IQSEC2Q5JU85 1478 aa9.72□□□□□ -0.85
NUP88-206ENST00000573169 PTPN23Q9H3S7 1636 aa9.72□□□□□ -0.85
NUP88-206ENST00000573169 ANKLE2Q86XL3 938 aa9.72□□□□□ -0.85
NUP88-206ENST00000573169 THEMISQ8N1K5 641 aaPredicted RBP9.72□□□□□ -0.85
NUP88-206ENST00000573169 KIF15Q9NS87 1388 aa9.72□□□□□ -0.85
NUP88-206ENST00000573169 UGGT1Q9NYU2 1555 aa9.71□□□□□ -0.85
NUP88-206ENST00000573169 CEP152O94986 1710 aa9.71□□□□□ -0.85
NUP88-206ENST00000573169 ILDR2Q71H61 639 aa9.71□□□□□ -0.86
NUP88-206ENST00000573169 ZBTB47Q9UFB7 747 aaPredicted RBP9.71□□□□□ -0.86
NUP88-206ENST00000573169 CLSPNQ9HAW4 1339 aa9.71□□□□□ -0.86
NUP88-206ENST00000573169 ERVK-7P63135 1459 aa9.71□□□□□ -0.86
NUP88-206ENST00000573169 NLRP1Q9C000 1473 aa9.71□□□□□ -0.86
NUP88-206ENST00000573169 DUOX2Q9NRD8 1548 aa9.71□□□□□ -0.86
NUP88-206ENST00000573169 SPATA31D1Q6ZQQ2 1576 aa9.71□□□□□ -0.86
NUP88-206ENST00000573169 EIF2AK4Q9P2K8 1649 aaKnown RBP9.71□□□□□ -0.86
NUP88-206ENST00000573169 POLR1AO95602 1720 aaPredicted RBP9.7□□□□□ -0.86
NUP88-206ENST00000573169 CLEC11AQ9Y240 323 aa9.7□□□□□ -0.86
NUP88-206ENST00000573169 DAPK1P53355 1430 aa9.7□□□□□ -0.86
NUP88-206ENST00000573169 FGD6Q6ZV73 1430 aa9.7□□□□□ -0.86
NUP88-206ENST00000573169 CROCC2H7BZ55 1655 aa9.69□□□□□ -0.86
NUP88-206ENST00000573169 PITPNM1O00562 1244 aa9.69□□□□□ -0.86
NUP88-206ENST00000573169 NPHP4O75161 1426 aaPredicted RBP9.69□□□□□ -0.86
NUP88-206ENST00000573169 ZC3H13Q5T200 1668 aaKnown RBP9.69□□□□□ -0.86
NUP88-206ENST00000573169 IFNLR1Q8IU57 520 aaPredicted RBP9.69□□□□□ -0.86
NUP88-206ENST00000573169 SHANK2Q9UPX8 1470 aa9.69□□□□□ -0.86
NUP88-206ENST00000573169 CFAP65Q6ZU64 1925 aaKnown RBP9.68□□□□□ -0.86
NUP88-206ENST00000573169 VWDEQ8N2E2 1590 aa9.68□□□□□ -0.86
NUP88-206ENST00000573169 PIP4K2BP78356 416 aa9.68□□□□□ -0.86
NUP88-206ENST00000573169 MED14O60244 1454 aa9.66□□□□□ -0.86
NUP88-206ENST00000573169 ERBINQ96RT1 1412 aa9.66□□□□□ -0.86
NUP88-206ENST00000573169 PRR29P0C7W0 189 aa9.66□□□□□ -0.86
NUP88-206ENST00000573169 LTKP29376 864 aa9.66□□□□□ -0.86
NUP88-206ENST00000573169 FAM50AQ14320 339 aaKnown RBP9.66□□□□□ -0.86
NUP88-206ENST00000573169 DEPDC5O75140 1603 aa9.66□□□□□ -0.86
NUP88-206ENST00000573169 CPS1P31327 1500 aa9.66□□□□□ -0.86
NUP88-206ENST00000573169 PRDM15P57071 1507 aaPredicted RBP9.66□□□□□ -0.86
NUP88-206ENST00000573169 UBR1Q8IWV7 1749 aa9.65□□□□□ -0.86
NUP88-206ENST00000573169 ANKRD30AQ9BXX3 1397 aa9.65□□□□□ -0.86
NUP88-206ENST00000573169 HSPA1LP34931 641 aa9.65□□□□□ -0.86
NUP88-206ENST00000573169 ARHGAP31Q2M1Z3 1444 aa9.65□□□□□ -0.87
NUP88-206ENST00000573169 IQGAP1P46940 1657 aa9.64□□□□□ -0.87
NUP88-206ENST00000573169 TXNDC2Q86VQ3 553 aa9.64□□□□□ -0.87
NUP88-206ENST00000573169 STRCP1A6NGW2 1772 aa9.64□□□□□ -0.87
NUP88-206ENST00000573169 KANK1Q14678 1352 aa9.63□□□□□ -0.87
NUP88-206ENST00000573169 TOM1O60784 492 aa9.63□□□□□ -0.87
NUP88-206ENST00000573169 IDI1Q13907 227 aa9.63□□□□□ -0.87
NUP88-206ENST00000573169 SPOCK2Q92563 424 aa9.63□□□□□ -0.87
NUP88-206ENST00000573169 PIK3C2BO00750 1634 aa9.63□□□□□ -0.87
NUP88-206ENST00000573169 SCAF11Q99590 1463 aaKnown RBP9.62□□□□□ -0.87
NUP88-206ENST00000573169 ALKQ9UM73 1620 aa9.62□□□□□ -0.87
NUP88-206ENST00000573169 LRRC7Q96NW7 1537 aa9.61□□□□□ -0.87
NUP88-206ENST00000573169 ARHGAP23Q9P227 1491 aa9.61□□□□□ -0.87
NUP88-206ENST00000573169 SLIT1O75093 1534 aa9.61□□□□□ -0.87
NUP88-206ENST00000573169 LMTK2Q8IWU2 1503 aa9.61□□□□□ -0.87
NUP88-206ENST00000573169 ADGRL2O95490 1459 aa9.6□□□□□ -0.87
NUP88-206ENST00000573169 SYNMO15061 1565 aa9.6□□□□□ -0.87
NUP88-206ENST00000573169 EID1Q9Y6B2 187 aa9.6□□□□□ -0.87
NUP88-206ENST00000573169 TMEM2Q9UHN6 1383 aa9.6□□□□□ -0.87
NUP88-206ENST00000573169 SOCS7O14512 581 aa9.59□□□□□ -0.87
NUP88-206ENST00000573169 NOS1P29475 1434 aa9.58□□□□□ -0.88
NUP88-206ENST00000573169 ANKRD50Q9ULJ7 1429 aa9.58□□□□□ -0.88
NUP88-206ENST00000573169 EFCAB6Q5THR3 1501 aa9.58□□□□□ -0.88
NUP88-206ENST00000573169 GABBR2O75899 941 aa9.58□□□□□ -0.88
NUP88-206ENST00000573169 ITGAEP38570 1179 aa9.58□□□□□ -0.88
NUP88-206ENST00000573169 RBM33Q96EV2 1170 aaKnown RBP9.58□□□□□ -0.88
NUP88-206ENST00000573169 SLC26A8Q96RN1 970 aa9.58□□□□□ -0.88
NUP88-206ENST00000573169 MED1Q15648 1581 aaPredicted RBP9.55□□□□□ -0.88
NUP88-206ENST00000573169 BCANQ96GW7 911 aa9.55□□□□□ -0.88
NUP88-206ENST00000573169 ADGRB3O60242 1522 aa9.55□□□□□ -0.88
NUP88-206ENST00000573169 XIRP1Q702N8 1843 aaKnown RBP9.54□□□□□ -0.88
NUP88-206ENST00000573169 SLC24A1O60721 1099 aa9.54□□□□□ -0.88
NUP88-206ENST00000573169 NUTM2DQ5VT03 806 aaPredicted RBP9.54□□□□□ -0.88
NUP88-206ENST00000573169 SLC52A1Q9NWF4 448 aa9.54□□□□□ -0.88
NUP88-206ENST00000573169 TET3O43151 1660 aa9.54□□□□□ -0.88
NUP88-206ENST00000573169 TMEM94Q12767 1356 aa9.53□□□□□ -0.88
NUP88-206ENST00000573169 KDM5AP29375 1690 aaKnown RBP9.53□□□□□ -0.88
NUP88-206ENST00000573169 CHGAP10645 457 aaKnown RBP9.53□□□□□ -0.88
NUP88-206ENST00000573169 KCNA6P17658 529 aa9.53□□□□□ -0.88
NUP88-206ENST00000573169 PROSER2Q86WR7 435 aaPredicted RBP9.53□□□□□ -0.88
NUP88-206ENST00000573169 UNC13BO14795 1591 aa9.52□□□□□ -0.89
NUP88-206ENST00000573169 RPRD2Q5VT52 1461 aaKnown RBP9.52□□□□□ -0.89
NUP88-206ENST00000573169 MYO5BQ9ULV0 1848 aa9.52□□□□□ -0.89
NUP88-206ENST00000573169 ZFYVE9O95405 1425 aa9.51□□□□□ -0.89
NUP88-206ENST00000573169 RIMS2Q9UQ26 1411 aa9.51□□□□□ -0.89
NUP88-206ENST00000573169 E9PCH4 1651 aa9.51□□□□□ -0.89
NUP88-206ENST00000573169 GCC2Q8IWJ2 1684 aa9.51□□□□□ -0.89
NUP88-206ENST00000573169 NUP155O75694 1391 aa9.5□□□□□ -0.89
NUP88-206ENST00000573169 ROCK1Q13464 1354 aa9.5□□□□□ -0.89
NUP88-206ENST00000573169 TMEM131LA2VDJ0 1609 aa9.5□□□□□ -0.89
NUP88-206ENST00000573169 PPP1R15AO75807 674 aaPredicted RBP9.5□□□□□ -0.89
NUP88-206ENST00000573169 C19orf67A6NJJ6 358 aa9.49□□□□□ -0.89
NUP88-206ENST00000573169 CREBZFQ9NS37 354 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms