RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 CHRDL2Q6WN34 429 aa12.44□□□□□ -0.42
PSEN1-209ENST00000553855 TRIM52Q96A61 297 aa12.44□□□□□ -0.42
PSEN1-209ENST00000553855 A2ML1A8K2U0 1454 aa12.44□□□□□ -0.42
PSEN1-209ENST00000553855 ACIN1Q9UKV3 1341 aaKnown RBP12.43□□□□□ -0.42
PSEN1-209ENST00000553855 LMTK2Q8IWU2 1503 aa12.43□□□□□ -0.42
PSEN1-209ENST00000553855 CEP152O94986 1710 aa12.43□□□□□ -0.42
PSEN1-209ENST00000553855 ERVK-7P63135 1459 aa12.43□□□□□ -0.42
PSEN1-209ENST00000553855 PITPNM1O00562 1244 aa12.43□□□□□ -0.42
PSEN1-209ENST00000553855 ECM2O94769 699 aaPredicted RBP12.43□□□□□ -0.42
PSEN1-209ENST00000553855 MYO3AQ8NEV4 1616 aa12.43□□□□□ -0.42
PSEN1-209ENST00000553855 PLCD3Q8N3E9 789 aa12.42□□□□□ -0.42
PSEN1-209ENST00000553855 CEP170BQ9Y4F5 1589 aaPredicted RBP12.42□□□□□ -0.42
PSEN1-209ENST00000553855 HFM1A2PYH4 1435 aa12.41□□□□□ -0.42
PSEN1-209ENST00000553855 NAIPQ13075 1403 aa12.41□□□□□ -0.42
PSEN1-209ENST00000553855 SPATA31D1Q6ZQQ2 1576 aa12.41□□□□□ -0.42
PSEN1-209ENST00000553855 UNC13BO14795 1591 aa12.4□□□□□ -0.42
PSEN1-209ENST00000553855 VWDEQ8N2E2 1590 aa12.4□□□□□ -0.42
PSEN1-209ENST00000553855 ANKLE2Q86XL3 938 aa12.4□□□□□ -0.42
PSEN1-209ENST00000553855 SLC52A1Q9NWF4 448 aa12.4□□□□□ -0.42
PSEN1-209ENST00000553855 RPRD2Q5VT52 1461 aaKnown RBP12.4□□□□□ -0.43
PSEN1-209ENST00000553855 UGGT1Q9NYU2 1555 aa12.39□□□□□ -0.43
PSEN1-209ENST00000553855 EFCAB6Q5THR3 1501 aa12.39□□□□□ -0.43
PSEN1-209ENST00000553855 ILDR2Q71H61 639 aa12.39□□□□□ -0.43
PSEN1-209ENST00000553855 ZNF142P52746 1687 aaPredicted RBP12.38□□□□□ -0.43
PSEN1-209ENST00000553855 NCKAP5LQ9HCH0 1330 aa12.38□□□□□ -0.43
PSEN1-209ENST00000553855 VSIG10Q8N0Z9 540 aa12.38□□□□□ -0.43
PSEN1-209ENST00000553855 BBXQ8WY36 941 aaPredicted RBP12.38□□□□□ -0.43
PSEN1-209ENST00000553855 EID1Q9Y6B2 187 aa12.38□□□□□ -0.43
PSEN1-209ENST00000553855 PLA2R1Q13018 1463 aa12.38□□□□□ -0.43
PSEN1-209ENST00000553855 CHGAP10645 457 aaKnown RBP12.37□□□□□ -0.43
PSEN1-209ENST00000553855 TET3O43151 1660 aa12.37□□□□□ -0.43
PSEN1-209ENST00000553855 GCC2Q8IWJ2 1684 aa12.37□□□□□ -0.43
PSEN1-209ENST00000553855 HDGFP51858 240 aaKnown RBP12.36□□□□□ -0.43
PSEN1-209ENST00000553855 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.36□□□□□ -0.43
PSEN1-209ENST00000553855 PTPRTO14522 1441 aa12.36□□□□□ -0.43
PSEN1-209ENST00000553855 DISP3Q9P2K9 1392 aa12.35□□□□□ -0.43
PSEN1-209ENST00000553855 IDI1Q13907 227 aa12.35□□□□□ -0.43
PSEN1-209ENST00000553855 MIER1Q8N108 512 aa12.35□□□□□ -0.43
PSEN1-209ENST00000553855 IQGAP3Q86VI3 1631 aa12.35□□□□□ -0.43
PSEN1-209ENST00000553855 NOS1P29475 1434 aa12.35□□□□□ -0.43
PSEN1-209ENST00000553855 SETD5Q9C0A6 1442 aa12.34□□□□□ -0.43
PSEN1-209ENST00000553855 CFAP65Q6ZU64 1925 aaKnown RBP12.33□□□□□ -0.44
PSEN1-209ENST00000553855 PRR29P0C7W0 189 aa12.33□□□□□ -0.44
PSEN1-209ENST00000553855 TXNDC2Q86VQ3 553 aa12.33□□□□□ -0.44
PSEN1-209ENST00000553855 BCANQ96GW7 911 aa12.32□□□□□ -0.44
PSEN1-209ENST00000553855 PPP1R15AO75807 674 aaPredicted RBP12.31□□□□□ -0.44
PSEN1-209ENST00000553855 STRCQ7RTU9 1775 aa12.3□□□□□ -0.44
PSEN1-209ENST00000553855 TMEM2Q9UHN6 1383 aa12.3□□□□□ -0.44
PSEN1-209ENST00000553855 NPHP4O75161 1426 aaPredicted RBP12.29□□□□□ -0.44
PSEN1-209ENST00000553855 ZNF326Q5BKZ1 582 aaKnown RBP12.29□□□□□ -0.44
PSEN1-209ENST00000553855 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.29□□□□□ -0.44
PSEN1-209ENST00000553855 SYNMO15061 1565 aa12.29□□□□□ -0.44
PSEN1-209ENST00000553855 PIK3C2BO00750 1634 aa12.29□□□□□ -0.44
PSEN1-209ENST00000553855 E9PCH4 1651 aa12.29□□□□□ -0.44
PSEN1-209ENST00000553855 RGL2O15211 777 aa12.28□□□□□ -0.44
PSEN1-209ENST00000553855 MPHOSPH9Q99550 1183 aa12.28□□□□□ -0.44
PSEN1-209ENST00000553855 SCAF11Q99590 1463 aaKnown RBP12.27□□□□□ -0.44
PSEN1-209ENST00000553855 ADGRB3O60242 1522 aa12.27□□□□□ -0.44
PSEN1-209ENST00000553855 CERKQ8TCT0 537 aa12.27□□□□□ -0.45
PSEN1-209ENST00000553855 UBR1Q8IWV7 1749 aa12.27□□□□□ -0.45
PSEN1-209ENST00000553855 RAB3GAP2Q9H2M9 1393 aa12.27□□□□□ -0.45
PSEN1-209ENST00000553855 PLEKHG5O94827 1062 aa12.26□□□□□ -0.45
PSEN1-209ENST00000553855 PAXIP1Q6ZW49 1069 aaPredicted RBP12.26□□□□□ -0.45
PSEN1-209ENST00000553855 ZBTB47Q9UFB7 747 aaPredicted RBP12.26□□□□□ -0.45
PSEN1-209ENST00000553855 SLIT1O75093 1534 aa12.26□□□□□ -0.45
PSEN1-209ENST00000553855 KDM5AP29375 1690 aaKnown RBP12.26□□□□□ -0.45
PSEN1-209ENST00000553855 POLR1AO95602 1720 aaPredicted RBP12.25□□□□□ -0.45
PSEN1-209ENST00000553855 HRCP23327 699 aa12.25□□□□□ -0.45
PSEN1-209ENST00000553855 LTKP29376 864 aa12.25□□□□□ -0.45
PSEN1-209ENST00000553855 MED14O60244 1454 aa12.25□□□□□ -0.45
PSEN1-209ENST00000553855 ARHGAP23Q9P227 1491 aa12.25□□□□□ -0.45
PSEN1-209ENST00000553855 ZNF335Q9H4Z2 1342 aaPredicted RBP12.24□□□□□ -0.45
PSEN1-209ENST00000553855 RIMS2Q9UQ26 1411 aa12.24□□□□□ -0.45
PSEN1-209ENST00000553855 CFAP44Q96MT7 982 aa12.23□□□□□ -0.45
PSEN1-209ENST00000553855 SPHKAPQ2M3C7 1700 aa12.23□□□□□ -0.45
PSEN1-209ENST00000553855 TRPM2O94759 1503 aa12.22□□□□□ -0.45
PSEN1-209ENST00000553855 CCDC144AA2RUR9 1427 aa12.22□□□□□ -0.45
PSEN1-209ENST00000553855 PIP4P2Q8N4L2 257 aa12.22□□□□□ -0.45
PSEN1-209ENST00000553855 NEURL4Q96JN8 1562 aa12.22□□□□□ -0.45
PSEN1-209ENST00000553855 CIZ1Q9ULV3 898 aaPredicted RBP12.21□□□□□ -0.45
PSEN1-209ENST00000553855 IQGAP1P46940 1657 aa12.21□□□□□ -0.45
PSEN1-209ENST00000553855 TMEM131LA2VDJ0 1609 aa12.2□□□□□ -0.46
PSEN1-209ENST00000553855 FXR2P51116 673 aaKnown RBP eCLIP12.2□□□□□ -0.46
PSEN1-209ENST00000553855 TRIM26Q12899 539 aaPredicted RBP12.2□□□□□ -0.46
PSEN1-209ENST00000553855 NUTM2DQ5VT03 806 aaPredicted RBP12.2□□□□□ -0.46
PSEN1-209ENST00000553855 POTEHQ6S545 545 aa12.2□□□□□ -0.46
PSEN1-209ENST00000553855 PLEKHG1Q9ULL1 1385 aa12.19□□□□□ -0.46
PSEN1-209ENST00000553855 VGFO15240 615 aaPredicted RBP12.19□□□□□ -0.46
PSEN1-209ENST00000553855 SLC26A8Q96RN1 970 aa12.19□□□□□ -0.46
PSEN1-209ENST00000553855 RPGRIP1LQ68CZ1 1315 aa12.18□□□□□ -0.46
PSEN1-209ENST00000553855 CPS1P31327 1500 aa12.18□□□□□ -0.46
PSEN1-209ENST00000553855 KDM2AQ9Y2K7 1162 aa12.18□□□□□ -0.46
PSEN1-209ENST00000553855 IQSEC2Q5JU85 1478 aa12.17□□□□□ -0.46
PSEN1-209ENST00000553855 ZFYVE9O95405 1425 aa12.17□□□□□ -0.46
PSEN1-209ENST00000553855 CLTCL1P53675 1640 aa12.16□□□□□ -0.46
PSEN1-209ENST00000553855 PRKAR2AP13861 404 aaKnown RBP12.16□□□□□ -0.46
PSEN1-209ENST00000553855 RGL3Q3MIN7 710 aa12.16□□□□□ -0.46
PSEN1-209ENST00000553855 SPRYD3Q8NCJ5 442 aa12.16□□□□□ -0.46
PSEN1-209ENST00000553855 TBX22Q9Y458 520 aa12.16□□□□□ -0.46
PSEN1-209ENST00000553855 LTBP4Q8N2S1 1624 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms