RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SEC24BO95487 1268 aa12.17□□□□□ -0.46
NEK3-201ENST00000550331 PTPRKQ15262 1439 aa12.17□□□□□ -0.46
NEK3-201ENST00000550331 HSPA1LP34931 641 aa12.16□□□□□ -0.46
NEK3-201ENST00000550331 RSPH4AQ5TD94 716 aa12.16□□□□□ -0.46
NEK3-201ENST00000550331 GGT6Q6P531 493 aa12.16□□□□□ -0.46
NEK3-201ENST00000550331 KIF12Q96FN5 646 aa12.16□□□□□ -0.46
NEK3-201ENST00000550331 POLR1AO95602 1720 aaPredicted RBP12.16□□□□□ -0.46
NEK3-201ENST00000550331 DHX29Q7Z478 1369 aaKnown RBP12.16□□□□□ -0.46
NEK3-201ENST00000550331 CAMSAP2Q08AD1 1489 aa12.15□□□□□ -0.46
NEK3-201ENST00000550331 VPS8Q8N3P4 1428 aa12.15□□□□□ -0.46
NEK3-201ENST00000550331 PIP4K2BP78356 416 aa12.15□□□□□ -0.46
NEK3-201ENST00000550331 TSPYL2Q9H2G4 693 aaPredicted RBP12.15□□□□□ -0.46
NEK3-201ENST00000550331 COLQQ9Y215 455 aaPredicted RBP12.15□□□□□ -0.46
NEK3-201ENST00000550331 FAM135AQ9P2D6 1515 aa12.15□□□□□ -0.46
NEK3-201ENST00000550331 DNMT1P26358 1616 aaKnown RBP12.13□□□□□ -0.47
NEK3-201ENST00000550331 ARHGEF5Q12774 1597 aa12.13□□□□□ -0.47
NEK3-201ENST00000550331 TOM1O60784 492 aa12.12□□□□□ -0.47
NEK3-201ENST00000550331 SLAIN1Q8ND83 568 aa12.12□□□□□ -0.47
NEK3-201ENST00000550331 A2ML1A8K2U0 1454 aa12.12□□□□□ -0.47
NEK3-201ENST00000550331 LRRC9Q6ZRR7 1453 aa12.12□□□□□ -0.47
NEK3-201ENST00000550331 CPS1P31327 1500 aa12.11□□□□□ -0.47
NEK3-201ENST00000550331 TRPC6Q9Y210 931 aa12.11□□□□□ -0.47
NEK3-201ENST00000550331 MAP3K1Q13233 1512 aa12.11□□□□□ -0.47
NEK3-201ENST00000550331 KDM5DQ9BY66 1539 aa12.11□□□□□ -0.47
NEK3-201ENST00000550331 NEURL4Q96JN8 1562 aa12.1□□□□□ -0.47
NEK3-201ENST00000550331 KIF3BO15066 747 aa12.1□□□□□ -0.47
NEK3-201ENST00000550331 PZPP20742 1482 aa12.09□□□□□ -0.47
NEK3-201ENST00000550331 SHANK2Q9UPX8 1470 aa12.09□□□□□ -0.47
NEK3-201ENST00000550331 TMEM121BQ9BXQ6 578 aaPredicted RBP12.09□□□□□ -0.47
NEK3-201ENST00000550331 TSPY4P0CV99 314 aa12.08□□□□□ -0.48
NEK3-201ENST00000550331 TSPY10P0CW01 314 aa12.08□□□□□ -0.48
NEK3-201ENST00000550331 IER5LQ5T953 404 aa12.08□□□□□ -0.48
NEK3-201ENST00000550331 MIA2Q96PC5 1412 aa12.07□□□□□ -0.48
NEK3-201ENST00000550331 MAST1Q9Y2H9 1570 aa12.07□□□□□ -0.48
NEK3-201ENST00000550331 WASHC2CQ9Y4E1 1318 aa12.07□□□□□ -0.48
NEK3-201ENST00000550331 TNRQ92752 1358 aa12.06□□□□□ -0.48
NEK3-201ENST00000550331 SPDYE4A6NLX3 237 aa12.06□□□□□ -0.48
NEK3-201ENST00000550331 MYOM3Q5VTT5 1437 aa12.05□□□□□ -0.48
NEK3-201ENST00000550331 LOC105371045A0A1W2PR82 267 aa12.05□□□□□ -0.48
NEK3-201ENST00000550331 TTLL13PA6NNM8 815 aa12.05□□□□□ -0.48
NEK3-201ENST00000550331 VWDEQ8N2E2 1590 aa12.05□□□□□ -0.48
NEK3-201ENST00000550331 ALKQ9UM73 1620 aa12.04□□□□□ -0.48
NEK3-201ENST00000550331 NLRP1Q9C000 1473 aa12.04□□□□□ -0.48
NEK3-201ENST00000550331 KANK4Q5T7N3 995 aaPredicted RBP12.04□□□□□ -0.48
NEK3-201ENST00000550331 FBXO31Q5XUX0 539 aaPredicted RBP12.04□□□□□ -0.48
NEK3-201ENST00000550331 RNF17Q9BXT8 1623 aaKnown RBP12.04□□□□□ -0.48
NEK3-201ENST00000550331 ANKLE2Q86XL3 938 aa12.03□□□□□ -0.48
NEK3-201ENST00000550331 EIF2AK4Q9P2K8 1649 aaKnown RBP12.03□□□□□ -0.48
NEK3-201ENST00000550331 MAP3K13O43283 966 aa12.02□□□□□ -0.49
NEK3-201ENST00000550331 ZC3H13Q5T200 1668 aaKnown RBP12.02□□□□□ -0.49
NEK3-201ENST00000550331 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.02□□□□□ -0.49
NEK3-201ENST00000550331 ABCC3O15438 1527 aa12.01□□□□□ -0.49
NEK3-201ENST00000550331 DEPDC5O75140 1603 aa12.01□□□□□ -0.49
NEK3-201ENST00000550331 IQGAP1P46940 1657 aa12.01□□□□□ -0.49
NEK3-201ENST00000550331 STRCP1A6NGW2 1772 aa12.01□□□□□ -0.49
NEK3-201ENST00000550331 NPHP4O75161 1426 aaPredicted RBP12.01□□□□□ -0.49
NEK3-201ENST00000550331 THEMISQ8N1K5 641 aaPredicted RBP12□□□□□ -0.49
NEK3-201ENST00000550331 UGGT1Q9NYU2 1555 aa12□□□□□ -0.49
NEK3-201ENST00000550331 MED14O60244 1454 aa11.99□□□□□ -0.49
NEK3-201ENST00000550331 DUOX2Q9NRD8 1548 aa11.99□□□□□ -0.49
NEK3-201ENST00000550331 MROH1Q8NDA8 1641 aa11.98□□□□□ -0.49
NEK3-201ENST00000550331 SYNMO15061 1565 aa11.98□□□□□ -0.49
NEK3-201ENST00000550331 ERVK-7P63135 1459 aa11.98□□□□□ -0.49
NEK3-201ENST00000550331 TRIM35Q9UPQ4 493 aa11.98□□□□□ -0.49
NEK3-201ENST00000550331 LRRC7Q96NW7 1537 aa11.97□□□□□ -0.49
NEK3-201ENST00000550331 ABCC5O15440 1437 aa11.96□□□□□ -0.49
NEK3-201ENST00000550331 ERBINQ96RT1 1412 aa11.96□□□□□ -0.49
NEK3-201ENST00000550331 KIF15Q9NS87 1388 aa11.96□□□□□ -0.49
NEK3-201ENST00000550331 PRDM15P57071 1507 aaPredicted RBP11.96□□□□□ -0.5
NEK3-201ENST00000550331 SNPHO15079 494 aa11.95□□□□□ -0.5
NEK3-201ENST00000550331 ARHGAP31Q2M1Z3 1444 aa11.94□□□□□ -0.5
NEK3-201ENST00000550331 CFAP65Q6ZU64 1925 aaKnown RBP11.94□□□□□ -0.5
NEK3-201ENST00000550331 PTPN23Q9H3S7 1636 aa11.94□□□□□ -0.5
NEK3-201ENST00000550331 DAPK1P53355 1430 aa11.94□□□□□ -0.5
NEK3-201ENST00000550331 FGD6Q6ZV73 1430 aa11.94□□□□□ -0.5
NEK3-201ENST00000550331 CROCC2H7BZ55 1655 aa11.94□□□□□ -0.5
NEK3-201ENST00000550331 XIRP1Q702N8 1843 aaKnown RBP11.93□□□□□ -0.5
NEK3-201ENST00000550331 RGS17Q9UGC6 210 aaPredicted RBP11.92□□□□□ -0.5
NEK3-201ENST00000550331 RRP7BPQ9NSQ0 103 aa11.91□□□□□ -0.5
NEK3-201ENST00000550331 CEP152O94986 1710 aa11.9□□□□□ -0.5
NEK3-201ENST00000550331 UBR1Q8IWV7 1749 aa11.9□□□□□ -0.5
NEK3-201ENST00000550331 KANK1Q14678 1352 aa11.9□□□□□ -0.5
NEK3-201ENST00000550331 ANKRD30AQ9BXX3 1397 aa11.9□□□□□ -0.5
NEK3-201ENST00000550331 SCAF11Q99590 1463 aaKnown RBP11.89□□□□□ -0.51
NEK3-201ENST00000550331 ARHGAP23Q9P227 1491 aa11.89□□□□□ -0.51
NEK3-201ENST00000550331 SGIP1Q9BQI5 828 aa11.89□□□□□ -0.51
NEK3-201ENST00000550331 SLIT1O75093 1534 aa11.89□□□□□ -0.51
NEK3-201ENST00000550331 LMTK2Q8IWU2 1503 aa11.88□□□□□ -0.51
NEK3-201ENST00000550331 MARVELD3Q96A59 401 aa11.88□□□□□ -0.51
NEK3-201ENST00000550331 PLCG2P16885 1265 aa11.87□□□□□ -0.51
NEK3-201ENST00000550331 ADGRL2O95490 1459 aa11.87□□□□□ -0.51
NEK3-201ENST00000550331 SETD1AO15047 1707 aaKnown RBP11.86□□□□□ -0.51
NEK3-201ENST00000550331 POTEAQ6S8J7 498 aa11.86□□□□□ -0.51
NEK3-201ENST00000550331 TXNDC2Q86VQ3 553 aa11.85□□□□□ -0.51
NEK3-201ENST00000550331 TMEM2Q9UHN6 1383 aa11.84□□□□□ -0.51
NEK3-201ENST00000550331 LTKP29376 864 aa11.84□□□□□ -0.51
NEK3-201ENST00000550331 CHIC2Q9UKJ5 165 aa11.84□□□□□ -0.51
NEK3-201ENST00000550331 EID1Q9Y6B2 187 aa11.84□□□□□ -0.51
NEK3-201ENST00000550331 EFCAB6Q5THR3 1501 aa11.84□□□□□ -0.51
NEK3-201ENST00000550331 KDM5AP29375 1690 aaKnown RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms