RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 HIRIP3Q9BW71 556 aaPredicted RBP8.81□□□□□ -1
SSBP1-213ENST00000496622 TSPOAP1O95153 1857 aa8.81□□□□□ -1
SSBP1-213ENST00000496622 NAIPQ13075 1403 aa8.8□□□□□ -1
SSBP1-213ENST00000496622 ZNF316A6NFI3 1004 aaPredicted RBP8.8□□□□□ -1
SSBP1-213ENST00000496622 CFAP44Q96MT7 982 aa8.8□□□□□ -1
SSBP1-213ENST00000496622 PTPN23Q9H3S7 1636 aa8.8□□□□□ -1
SSBP1-213ENST00000496622 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.79□□□□□ -1
SSBP1-213ENST00000496622 OTUD5Q96G74 571 aa8.79□□□□□ -1
SSBP1-213ENST00000496622 KIF14Q15058 1648 aa8.79□□□□□ -1
SSBP1-213ENST00000496622 PTPRTO14522 1441 aa8.79□□□□□ -1
SSBP1-213ENST00000496622 SOX12O15370 315 aa8.79□□□□□ -1
SSBP1-213ENST00000496622 HOMEZQ8IX15 550 aa8.79□□□□□ -1
SSBP1-213ENST00000496622 ADCY10Q96PN6 1610 aa8.78□□□□□ -1
SSBP1-213ENST00000496622 UACAQ9BZF9 1416 aa8.78□□□□□ -1
SSBP1-213ENST00000496622 PAXIP1Q6ZW49 1069 aaPredicted RBP8.78□□□□□ -1
SSBP1-213ENST00000496622 GLI2P10070 1586 aa8.78□□□□□ -1
SSBP1-213ENST00000496622 GPATCH8Q9UKJ3 1502 aaKnown RBP8.78□□□□□ -1
SSBP1-213ENST00000496622 HFM1A2PYH4 1435 aa8.78□□□□□ -1
SSBP1-213ENST00000496622 ABCC5O15440 1437 aa8.77□□□□□ -1
SSBP1-213ENST00000496622 NLRP6P59044 892 aa8.77□□□□□ -1.01
SSBP1-213ENST00000496622 ABCA8O94911 1581 aa8.77□□□□□ -1.01
SSBP1-213ENST00000496622 ADAMTSL3P82987 1691 aa8.77□□□□□ -1.01
SSBP1-213ENST00000496622 UHRF1BP1LA0JNW5 1464 aa8.76□□□□□ -1.01
SSBP1-213ENST00000496622 CCDC136Q96JN2 1154 aa8.76□□□□□ -1.01
SSBP1-213ENST00000496622 CLSPNQ9HAW4 1339 aa8.76□□□□□ -1.01
SSBP1-213ENST00000496622 MIA2Q96PC5 1412 aa8.76□□□□□ -1.01
SSBP1-213ENST00000496622 NEFLP07196 543 aa8.75□□□□□ -1.01
SSBP1-213ENST00000496622 DAPK1P53355 1430 aa8.75□□□□□ -1.01
SSBP1-213ENST00000496622 SALL2Q9Y467 1007 aaPredicted RBP8.75□□□□□ -1.01
SSBP1-213ENST00000496622 MICALL2Q8IY33 904 aa8.75□□□□□ -1.01
SSBP1-213ENST00000496622 BBXQ8WY36 941 aaPredicted RBP8.75□□□□□ -1.01
SSBP1-213ENST00000496622 MPHOSPH9Q99550 1183 aa8.74□□□□□ -1.01
SSBP1-213ENST00000496622 BOLA1Q9Y3E2 137 aa8.74□□□□□ -1.01
SSBP1-213ENST00000496622 TMEM92Q6UXU6 159 aa8.74□□□□□ -1.01
SSBP1-213ENST00000496622 TCOF1Q13428 1488 aaKnown RBP8.74□□□□□ -1.01
SSBP1-213ENST00000496622 CAMSAP2Q08AD1 1489 aa8.73□□□□□ -1.01
SSBP1-213ENST00000496622 TSPY4P0CV99 314 aa8.72□□□□□ -1.01
SSBP1-213ENST00000496622 TSPY10P0CW01 314 aa8.72□□□□□ -1.01
SSBP1-213ENST00000496622 PPRC1Q5VV67 1664 aaKnown RBP8.71□□□□□ -1.01
SSBP1-213ENST00000496622 DENND4BO75064 1496 aaPredicted RBP8.71□□□□□ -1.02
SSBP1-213ENST00000496622 CADPS2Q86UW7 1296 aa8.7□□□□□ -1.02
SSBP1-213ENST00000496622 ABCC2Q92887 1545 aa8.7□□□□□ -1.02
SSBP1-213ENST00000496622 NCOA1Q15788 1441 aa8.7□□□□□ -1.02
SSBP1-213ENST00000496622 PPP1R15AO75807 674 aaPredicted RBP8.69□□□□□ -1.02
SSBP1-213ENST00000496622 AFAP1Q8N556 730 aa8.69□□□□□ -1.02
SSBP1-213ENST00000496622 SPRYD3Q8NCJ5 442 aa8.69□□□□□ -1.02
SSBP1-213ENST00000496622 C3orf67Q6ZVT6 689 aa8.68□□□□□ -1.02
SSBP1-213ENST00000496622 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.68□□□□□ -1.02
SSBP1-213ENST00000496622 AKNAQ7Z591 1439 aa8.68□□□□□ -1.02
SSBP1-213ENST00000496622 MAP3K4Q9Y6R4 1608 aa8.68□□□□□ -1.02
SSBP1-213ENST00000496622 YTHDC1Q96MU7 727 aaKnown RBP8.68□□□□□ -1.02
SSBP1-213ENST00000496622 TONSLQ96HA7 1378 aa8.68□□□□□ -1.02
SSBP1-213ENST00000496622 SLAIN1Q8ND83 568 aa8.67□□□□□ -1.02
SSBP1-213ENST00000496622 TMEM121BQ9BXQ6 578 aaPredicted RBP8.67□□□□□ -1.02
SSBP1-213ENST00000496622 L3MBTL2Q969R5 705 aa8.67□□□□□ -1.02
SSBP1-213ENST00000496622 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.66□□□□□ -1.022e-6■□□□□ 8.3
SSBP1-213ENST00000496622 KDM5BQ9UGL1 1544 aa8.66□□□□□ -1.02
SSBP1-213ENST00000496622 MYT1LQ9UL68 1186 aa8.66□□□□□ -1.02
SSBP1-213ENST00000496622 TEX14Q8IWB6 1497 aa8.66□□□□□ -1.02
SSBP1-213ENST00000496622 MBD5Q9P267 1494 aa8.66□□□□□ -1.02
SSBP1-213ENST00000496622 C9orf84Q5VXU9 1444 aa8.66□□□□□ -1.02
SSBP1-213ENST00000496622 ANKRD30AQ9BXX3 1397 aa8.66□□□□□ -1.02
SSBP1-213ENST00000496622 TTC37Q6PGP7 1564 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 ANKRD50Q9ULJ7 1429 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 NUP155O75694 1391 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 ROCK1Q13464 1354 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 FGD1P98174 961 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 ZNF326Q5BKZ1 582 aaKnown RBP8.65□□□□□ -1.02
SSBP1-213ENST00000496622 TSHZ2Q9NRE2 1034 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 ARHGAP5Q13017 1502 aa8.65□□□□□ -1.02
SSBP1-213ENST00000496622 KIF15Q9NS87 1388 aa8.65□□□□□ -1.03
SSBP1-213ENST00000496622 DNMT1P26358 1616 aaKnown RBP8.65□□□□□ -1.03
SSBP1-213ENST00000496622 G3V3G9 751 aa8.65□□□□□ -1.03
SSBP1-213ENST00000496622 L3MBTL3Q96JM7 780 aaPredicted RBP8.65□□□□□ -1.03
SSBP1-213ENST00000496622 SCUBE2Q9NQ36 999 aa8.65□□□□□ -1.03
SSBP1-213ENST00000496622 DDX10Q13206 875 aaKnown RBP8.64□□□□□ -1.03
SSBP1-213ENST00000496622 NPM2Q86SE8 214 aaKnown RBP8.64□□□□□ -1.03
SSBP1-213ENST00000496622 YEATS2Q9ULM3 1422 aa8.64□□□□□ -1.03
SSBP1-213ENST00000496622 CDC42BPAQ5VT25 1732 aa8.64□□□□□ -1.03
SSBP1-213ENST00000496622 EFCAB2Q5VUJ9 269 aa8.64□□□□□ -1.03
SSBP1-213ENST00000496622 ARHGEF12Q9NZN5 1544 aa8.63□□□□□ -1.03
SSBP1-213ENST00000496622 PLCB2Q00722 1185 aa8.63□□□□□ -1.03
SSBP1-213ENST00000496622 C2orf72A6NCS6 295 aa8.63□□□□□ -1.03
SSBP1-213ENST00000496622 DHX37Q8IY37 1157 aaKnown RBP8.63□□□□□ -1.03
SSBP1-213ENST00000496622 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.63□□□□□ -1.03
SSBP1-213ENST00000496622 SYCP2Q9BX26 1530 aa8.63□□□□□ -1.03
SSBP1-213ENST00000496622 TRAPPC8Q9Y2L5 1435 aa8.62□□□□□ -1.03
SSBP1-213ENST00000496622 ZCCHC11Q5TAX3 1644 aaKnown RBP8.62□□□□□ -1.03
SSBP1-213ENST00000496622 SAMD9LQ8IVG5 1584 aa8.62□□□□□ -1.03
SSBP1-213ENST00000496622 NCKAP5LQ9HCH0 1330 aa8.62□□□□□ -1.03
SSBP1-213ENST00000496622 NBPF8Q3BBV2 869 aa8.62□□□□□ -1.03
SSBP1-213ENST00000496622 CHMP4AQ9BY43 222 aa8.62□□□□□ -1.03
SSBP1-213ENST00000496622 ANKRD30BQ9BXX2 1392 aa8.62□□□□□ -1.03
SSBP1-213ENST00000496622 ASXL2Q76L83 1435 aa8.61□□□□□ -1.03
SSBP1-213ENST00000496622 COL17A1Q9UMD9 1497 aaPredicted RBP8.61□□□□□ -1.03
SSBP1-213ENST00000496622 A0A0U1RQG5 324 aaPredicted RBP8.61□□□□□ -1.03
SSBP1-213ENST00000496622 KDM2AQ9Y2K7 1162 aa8.61□□□□□ -1.03
SSBP1-213ENST00000496622 PLCH2O75038 1416 aa8.6□□□□□ -1.03
SSBP1-213ENST00000496622 PZPP20742 1482 aa8.6□□□□□ -1.03
SSBP1-213ENST00000496622 HAP1P54257 671 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms