RNA–Protein interactions for RNA: ENST00000491467.1

SRGAP3-210, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-210ENST00000491467 INO80Q9ULG1 1556 aaPredicted RBP17.24■□□□□ 0.35
SRGAP3-210ENST00000491467 SYCP2Q9BX26 1530 aa17.24■□□□□ 0.35
SRGAP3-210ENST00000491467 TXNDC2Q86VQ3 553 aa17.23■□□□□ 0.35
SRGAP3-210ENST00000491467 C8orf37Q96NL8 207 aa17.23■□□□□ 0.35
SRGAP3-210ENST00000491467 WASHC2CQ9Y4E1 1318 aa17.21■□□□□ 0.35
SRGAP3-210ENST00000491467 UBR1Q8IWV7 1749 aa17.21■□□□□ 0.35
SRGAP3-210ENST00000491467 CFAP65Q6ZU64 1925 aaKnown RBP17.21■□□□□ 0.35
SRGAP3-210ENST00000491467 CAMSAP2Q08AD1 1489 aa17.2■□□□□ 0.34
SRGAP3-210ENST00000491467 LTKP29376 864 aa17.2■□□□□ 0.34
SRGAP3-210ENST00000491467 CFDP1Q9UEE9 299 aaPredicted RBP17.2■□□□□ 0.34
SRGAP3-210ENST00000491467 ABCC5O15440 1437 aa17.2■□□□□ 0.34
SRGAP3-210ENST00000491467 KCNA6P17658 529 aa17.19■□□□□ 0.34
SRGAP3-210ENST00000491467 ADGRL2O95490 1459 aa17.18■□□□□ 0.34
SRGAP3-210ENST00000491467 NWD1Q149M9 1564 aa17.17■□□□□ 0.34
SRGAP3-210ENST00000491467 PRDM15P57071 1507 aaPredicted RBP17.16■□□□□ 0.34
SRGAP3-210ENST00000491467 NHSL1Q5SYE7 1610 aa17.16■□□□□ 0.34
SRGAP3-210ENST00000491467 AHDC1Q5TGY3 1603 aaPredicted RBP17.16■□□□□ 0.34
SRGAP3-210ENST00000491467 ARHGEF5Q12774 1597 aa17.15■□□□□ 0.34
SRGAP3-210ENST00000491467 PSDA5PKW4 1024 aaPredicted RBP17.15■□□□□ 0.34
SRGAP3-210ENST00000491467 KIF3BO15066 747 aa17.15■□□□□ 0.34
SRGAP3-210ENST00000491467 EID1Q9Y6B2 187 aa17.15■□□□□ 0.34
SRGAP3-210ENST00000491467 RSPH4AQ5TD94 716 aa17.14■□□□□ 0.33
SRGAP3-210ENST00000491467 RRP7BPQ9NSQ0 103 aa17.14■□□□□ 0.33
SRGAP3-210ENST00000491467 KDM5AP29375 1690 aaKnown RBP17.13■□□□□ 0.33
SRGAP3-210ENST00000491467 CHIC2Q9UKJ5 165 aa17.13■□□□□ 0.33
SRGAP3-210ENST00000491467 ABCC3O15438 1527 aa17.12■□□□□ 0.33
SRGAP3-210ENST00000491467 DIP2AQ14689 1571 aa17.12■□□□□ 0.33
SRGAP3-210ENST00000491467 DEFB132Q7Z7B7 95 aa17.12■□□□□ 0.33
SRGAP3-210ENST00000491467 PPP1R15AO75807 674 aaPredicted RBP17.1■□□□□ 0.33
SRGAP3-210ENST00000491467 SIN3AQ96ST3 1273 aa17.1■□□□□ 0.33
SRGAP3-210ENST00000491467 ANKRD30AQ9BXX3 1397 aa17.1■□□□□ 0.33
SRGAP3-210ENST00000491467 ZNF644Q9H582 1327 aaPredicted RBP17.09■□□□□ 0.33
SRGAP3-210ENST00000491467 SLIT1O75093 1534 aa17.09■□□□□ 0.33
SRGAP3-210ENST00000491467 ARHGAP23Q9P227 1491 aa17.08■□□□□ 0.32
SRGAP3-210ENST00000491467 NEUROD1Q13562 356 aa17.08■□□□□ 0.32
SRGAP3-210ENST00000491467 SLC26A8Q96RN1 970 aa17.08■□□□□ 0.32
SRGAP3-210ENST00000491467 NKTRP30414 1462 aaKnown RBP17.07■□□□□ 0.32
SRGAP3-210ENST00000491467 DHX29Q7Z478 1369 aaKnown RBP17.07■□□□□ 0.32
SRGAP3-210ENST00000491467 TONSLQ96HA7 1378 aa17.07■□□□□ 0.32
SRGAP3-210ENST00000491467 SF3B2Q13435 895 aaKnown RBP17.07■□□□□ 0.32
SRGAP3-210ENST00000491467 PLEKHH2Q8IVE3 1493 aa17.06■□□□□ 0.32
SRGAP3-210ENST00000491467 TRPC5Q9UL62 973 aaPredicted RBP17.06■□□□□ 0.32
SRGAP3-210ENST00000491467 BLMP54132 1417 aaPredicted RBP17.05■□□□□ 0.32
SRGAP3-210ENST00000491467 MPHOSPH9Q99550 1183 aa17.05■□□□□ 0.32
SRGAP3-210ENST00000491467 USP21Q9UK80 565 aa17.05■□□□□ 0.32
SRGAP3-210ENST00000491467 MAST1Q9Y2H9 1570 aa17.04■□□□□ 0.32
SRGAP3-210ENST00000491467 C14orf37Q86TY3 774 aa17.04■□□□□ 0.32
SRGAP3-210ENST00000491467 ADAMTS2O95450 1211 aa17.03■□□□□ 0.32
SRGAP3-210ENST00000491467 TSPY4P0CV99 314 aa17.03■□□□□ 0.32
SRGAP3-210ENST00000491467 TSPY10P0CW01 314 aa17.03■□□□□ 0.32
SRGAP3-210ENST00000491467 KIAA1107Q9UPP5 1409 aa17.03■□□□□ 0.32
SRGAP3-210ENST00000491467 ERVK-7P63135 1459 aa17.02■□□□□ 0.32
SRGAP3-210ENST00000491467 DCAF8L1A6NGE4 600 aa17.02■□□□□ 0.32
SRGAP3-210ENST00000491467 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.01■□□□□ 0.31
SRGAP3-210ENST00000491467 CCDC141Q6ZP82 1450 aa17■□□□□ 0.31
SRGAP3-210ENST00000491467 MBD5Q9P267 1494 aa17■□□□□ 0.31
SRGAP3-210ENST00000491467 BCANQ96GW7 911 aa16.99■□□□□ 0.31
SRGAP3-210ENST00000491467 BCL9LQ86UU0 1499 aa16.99■□□□□ 0.31
SRGAP3-210ENST00000491467 CHD2O14647 1828 aaKnown RBP16.98■□□□□ 0.31
SRGAP3-210ENST00000491467 ATF3P18847 181 aa16.98■□□□□ 0.31
SRGAP3-210ENST00000491467 C1QTNF8P60827 252 aa16.98■□□□□ 0.31
SRGAP3-210ENST00000491467 CADPS2Q86UW7 1296 aa16.98■□□□□ 0.31
SRGAP3-210ENST00000491467 LRRC59Q96AG4 307 aaKnown RBP16.98■□□□□ 0.31
SRGAP3-210ENST00000491467 TET3O43151 1660 aa16.97■□□□□ 0.31
SRGAP3-210ENST00000491467 ANKRD50Q9ULJ7 1429 aa16.97■□□□□ 0.31
SRGAP3-210ENST00000491467 BRINP3Q76B58 766 aa16.97■□□□□ 0.31
SRGAP3-210ENST00000491467 STAG3Q9UJ98 1225 aa16.96■□□□□ 0.31
SRGAP3-210ENST00000491467 ANKRD30BQ9BXX2 1392 aa16.96■□□□□ 0.31
SRGAP3-210ENST00000491467 RTEL1-TNFRSF6BF6WH68 1400 aa16.95■□□□□ 0.3
SRGAP3-210ENST00000491467 RPRD2Q5VT52 1461 aaKnown RBP16.94■□□□□ 0.3
SRGAP3-210ENST00000491467 BRWD3Q6RI45 1802 aa16.94■□□□□ 0.3
SRGAP3-210ENST00000491467 TMEM2Q9UHN6 1383 aa16.94■□□□□ 0.3
SRGAP3-210ENST00000491467 ZNF784Q8NCA9 323 aaPredicted RBP16.94■□□□□ 0.3
SRGAP3-210ENST00000491467 SLC4A1APQ9BWU0 796 aaKnown RBP16.94■□□□□ 0.3
SRGAP3-210ENST00000491467 ATRNO75882 1429 aa16.94■□□□□ 0.3
SRGAP3-210ENST00000491467 PIK3C2BO00750 1634 aa16.93■□□□□ 0.3
SRGAP3-210ENST00000491467 CENPBP07199 599 aaPredicted RBP16.93■□□□□ 0.3
SRGAP3-210ENST00000491467 PNPLA6Q8IY17 1366 aa16.91■□□□□ 0.3
SRGAP3-210ENST00000491467 CEP152O94986 1710 aa16.91■□□□□ 0.3
SRGAP3-210ENST00000491467 R3HDM1Q15032 1099 aaKnown RBP16.91■□□□□ 0.3
SRGAP3-210ENST00000491467 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.91■□□□□ 0.3
SRGAP3-210ENST00000491467 MROH1Q8NDA8 1641 aa16.9■□□□□ 0.3
SRGAP3-210ENST00000491467 MIER1Q8N108 512 aa16.9■□□□□ 0.3
SRGAP3-210ENST00000491467 C19orf44Q9H6X5 657 aa16.9■□□□□ 0.3
SRGAP3-210ENST00000491467 KIF15Q9NS87 1388 aa16.89■□□□□ 0.29
SRGAP3-210ENST00000491467 NCOA3Q9Y6Q9 1424 aa16.88■□□□□ 0.29
SRGAP3-210ENST00000491467 ASXL1Q8IXJ9 1541 aa16.88■□□□□ 0.29
SRGAP3-210ENST00000491467 UNC13BO14795 1591 aa16.87■□□□□ 0.29
SRGAP3-210ENST00000491467 FNBP4Q8N3X1 1017 aaPredicted RBP16.87■□□□□ 0.29
SRGAP3-210ENST00000491467 BAG6P46379 1132 aa16.86■□□□□ 0.29
SRGAP3-210ENST00000491467 DUOX2Q9NRD8 1548 aa16.86■□□□□ 0.29
SRGAP3-210ENST00000491467 GJD4Q96KN9 370 aaPredicted RBP16.85■□□□□ 0.29
SRGAP3-210ENST00000491467 DDX17Q92841 729 aaKnown RBP16.84■□□□□ 0.29
SRGAP3-210ENST00000491467 NUP155O75694 1391 aa16.83■□□□□ 0.28
SRGAP3-210ENST00000491467 EFCAB6Q5THR3 1501 aa16.83■□□□□ 0.28
SRGAP3-210ENST00000491467 SPHKAPQ2M3C7 1700 aa16.82■□□□□ 0.28
SRGAP3-210ENST00000491467 CAMTA1Q9Y6Y1 1673 aa16.82■□□□□ 0.28
SRGAP3-210ENST00000491467 CEP350Q5VT06 3117 aa16.82■□□□□ 0.28
SRGAP3-210ENST00000491467 IQGAP3Q86VI3 1631 aa16.81■□□□□ 0.28
SRGAP3-210ENST00000491467 L3MBTL2Q969R5 705 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms