RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 PLIN1O60240 522 aa18.55■□□□□ 0.56
TCOF1-202ENST00000377797 DIAPH1O60610 1272 aaKnown RBP18.55■□□□□ 0.56
TCOF1-202ENST00000377797 PPP2R1AP30153 589 aa18.55■□□□□ 0.56
TCOF1-202ENST00000377797 WDR7Q9Y4E6 1490 aa18.54■□□□□ 0.56
TCOF1-202ENST00000377797 E9PSI1 815 aa18.54■□□□□ 0.56
TCOF1-202ENST00000377797 TRAPPC8Q9Y2L5 1435 aa18.54■□□□□ 0.56
TCOF1-202ENST00000377797 CSB-PGBD3P0DP91 1061 aa18.54■□□□□ 0.56
TCOF1-202ENST00000377797 MTHFSP49914 203 aa18.53■□□□□ 0.56
TCOF1-202ENST00000377797 LMOD3Q0VAK6 560 aa18.53■□□□□ 0.56
TCOF1-202ENST00000377797 ITPRIPQ8IWB1 547 aa18.53■□□□□ 0.56
TCOF1-202ENST00000377797 IDI1Q13907 227 aa18.52■□□□□ 0.56
TCOF1-202ENST00000377797 RBM19Q9Y4C8 960 aaKnown RBP18.52■□□□□ 0.56
TCOF1-202ENST00000377797 BECN1Q14457 450 aa18.52■□□□□ 0.55
TCOF1-202ENST00000377797 ADGRF5Q8IZF2 1346 aa18.52■□□□□ 0.55
TCOF1-202ENST00000377797 ABCC2Q92887 1545 aa18.51■□□□□ 0.55
TCOF1-202ENST00000377797 RRP1P56182 461 aaKnown RBP18.51■□□□□ 0.55
TCOF1-202ENST00000377797 BCL2L13Q9BXK5 485 aa18.51■□□□□ 0.55
TCOF1-202ENST00000377797 PNISRQ8TF01 805 aaKnown RBP18.51■□□□□ 0.55
TCOF1-202ENST00000377797 FBXO31Q5XUX0 539 aaPredicted RBP18.5■□□□□ 0.55
TCOF1-202ENST00000377797 NGEFQ8N5V2 710 aa18.5■□□□□ 0.55
TCOF1-202ENST00000377797 MAGI3Q5TCQ9 1506 aa18.5■□□□□ 0.55
TCOF1-202ENST00000377797 RUNDC1Q96C34 613 aa18.49■□□□□ 0.55
TCOF1-202ENST00000377797 ELL2O00472 640 aaPredicted RBP18.48■□□□□ 0.55
TCOF1-202ENST00000377797 THEMISQ8N1K5 641 aaPredicted RBP18.48■□□□□ 0.55
TCOF1-202ENST00000377797 EXOC6Q8TAG9 804 aa18.48■□□□□ 0.55
TCOF1-202ENST00000377797 SLC26A8Q96RN1 970 aa18.47■□□□□ 0.55
TCOF1-202ENST00000377797 KDM5BQ9UGL1 1544 aa18.47■□□□□ 0.55
TCOF1-202ENST00000377797 CDK19Q9BWU1 502 aa18.47■□□□□ 0.55
TCOF1-202ENST00000377797 DUOX2Q9NRD8 1548 aa18.47■□□□□ 0.55
TCOF1-202ENST00000377797 RWDD1Q9H446 243 aaPredicted RBP18.46■□□□□ 0.55
TCOF1-202ENST00000377797 CABP1Q9NZU7 370 aa18.46■□□□□ 0.55
TCOF1-202ENST00000377797 RIPK4P57078 832 aa18.45■□□□□ 0.54
TCOF1-202ENST00000377797 STK31Q9BXU1 1019 aa18.44■□□□□ 0.54
TCOF1-202ENST00000377797 TSHZ2Q9NRE2 1034 aa18.44■□□□□ 0.54
TCOF1-202ENST00000377797 CDCA7LQ96GN5 454 aa18.44■□□□□ 0.54
TCOF1-202ENST00000377797 TCERG1O14776 1098 aaKnown RBP18.44■□□□□ 0.54
TCOF1-202ENST00000377797 PSME1Q06323 249 aa18.43■□□□□ 0.54
TCOF1-202ENST00000377797 SHANK2Q9UPX8 1470 aa18.43■□□□□ 0.54
TCOF1-202ENST00000377797 OS9Q13438 667 aaPredicted RBP18.43■□□□□ 0.54
TCOF1-202ENST00000377797 CASC1Q6TDU7 716 aa18.43■□□□□ 0.54
TCOF1-202ENST00000377797 HMOX1P09601 288 aa18.43■□□□□ 0.54
TCOF1-202ENST00000377797 DNMT1P26358 1616 aaKnown RBP18.42■□□□□ 0.54
TCOF1-202ENST00000377797 CRBNQ96SW2 442 aa18.42■□□□□ 0.54
TCOF1-202ENST00000377797 POGZQ7Z3K3 1410 aa18.42■□□□□ 0.54
TCOF1-202ENST00000377797 A2MP01023 1474 aa18.41■□□□□ 0.54
TCOF1-202ENST00000377797 ZNF518AQ6AHZ1 1483 aa18.41■□□□□ 0.54
TCOF1-202ENST00000377797 FAM135AQ9P2D6 1515 aa18.41■□□□□ 0.54
TCOF1-202ENST00000377797 APBB1O00213 710 aa18.41■□□□□ 0.54
TCOF1-202ENST00000377797 TCP11L2Q8N4U5 519 aa18.41■□□□□ 0.54
TCOF1-202ENST00000377797 PMFBP1Q8TBY8 1022 aa18.41■□□□□ 0.54
TCOF1-202ENST00000377797 NOS1P29475 1434 aa18.39■□□□□ 0.54
TCOF1-202ENST00000377797 COG6Q9Y2V7 657 aa18.39■□□□□ 0.53
TCOF1-202ENST00000377797 NLRP6P59044 892 aa18.38■□□□□ 0.53
TCOF1-202ENST00000377797 NUTM2GQ5VZR2 741 aa18.38■□□□□ 0.53
TCOF1-202ENST00000377797 ZKSCAN2Q63HK3 967 aa18.37■□□□□ 0.53
TCOF1-202ENST00000377797 PZPP20742 1482 aa18.37■□□□□ 0.53
TCOF1-202ENST00000377797 SLC4A10Q6U841 1118 aa18.37■□□□□ 0.53
TCOF1-202ENST00000377797 WAPLQ7Z5K2 1190 aa18.37■□□□□ 0.53
TCOF1-202ENST00000377797 RTEL1-TNFRSF6BF6WH68 1400 aa18.37■□□□□ 0.53
TCOF1-202ENST00000377797 CHMP4AQ9BY43 222 aa18.37■□□□□ 0.53
TCOF1-202ENST00000377797 NOP58Q9Y2X3 529 aaKnown RBP18.36■□□□□ 0.53
TCOF1-202ENST00000377797 ATAD2Q6PL18 1390 aa18.36■□□□□ 0.53
TCOF1-202ENST00000377797 EIF5BO60841 1220 aaKnown RBP18.36■□□□□ 0.53
TCOF1-202ENST00000377797 CEBPAP49715 358 aaPredicted RBP18.36■□□□□ 0.53
TCOF1-202ENST00000377797 C14orf93Q9H972 538 aaKnown RBP18.36■□□□□ 0.53
TCOF1-202ENST00000377797 ABCC10Q5T3U5 1492 aa18.35■□□□□ 0.53
TCOF1-202ENST00000377797 ADGRL2O95490 1459 aa18.35■□□□□ 0.53
TCOF1-202ENST00000377797 PPP6R1Q9UPN7 881 aa18.35■□□□□ 0.53
TCOF1-202ENST00000377797 SCAF11Q99590 1463 aaKnown RBP18.34■□□□□ 0.53
TCOF1-202ENST00000377797 NSD3Q9BZ95 1437 aa18.33■□□□□ 0.52
TCOF1-202ENST00000377797 ZNF692Q9BU19 519 aaPredicted RBP18.32■□□□□ 0.52
TCOF1-202ENST00000377797 DISP3Q9P2K9 1392 aa18.32■□□□□ 0.52
TCOF1-202ENST00000377797 ANKLE2Q86XL3 938 aa18.32■□□□□ 0.52
TCOF1-202ENST00000377797 CCDC61Q9Y6R9 512 aa18.32■□□□□ 0.52
TCOF1-202ENST00000377797 RALGAPBQ86X10 1494 aa18.31■□□□□ 0.52
TCOF1-202ENST00000377797 PRAG1Q86YV5 1406 aa18.31■□□□□ 0.52
TCOF1-202ENST00000377797 ATF3P18847 181 aa18.31■□□□□ 0.52
TCOF1-202ENST00000377797 PRKAR2BP31323 418 aa18.31■□□□□ 0.52
TCOF1-202ENST00000377797 CENPQQ7L2Z9 268 aaPredicted RBP18.31■□□□□ 0.52
TCOF1-202ENST00000377797 ABCA8O94911 1581 aa18.31■□□□□ 0.52
TCOF1-202ENST00000377797 ABTB2Q8N961 1025 aa18.3■□□□□ 0.52
TCOF1-202ENST00000377797 TEFQ10587 303 aa18.3■□□□□ 0.52
TCOF1-202ENST00000377797 PROSER2Q86WR7 435 aaPredicted RBP18.29■□□□□ 0.52
TCOF1-202ENST00000377797 ESCO1Q5FWF5 840 aa18.29■□□□□ 0.52
TCOF1-202ENST00000377797 NUDT16Q96DE0 195 aaKnown RBP18.29■□□□□ 0.52
TCOF1-202ENST00000377797 ZNF330Q9Y3S2 320 aaPredicted RBP18.29■□□□□ 0.52
TCOF1-202ENST00000377797 GNAI1P63096 354 aa18.28■□□□□ 0.52
TCOF1-202ENST00000377797 C1orf141Q5JVX7 400 aa18.28■□□□□ 0.52
TCOF1-202ENST00000377797 ANP32EQ9BTT0 268 aa18.28■□□□□ 0.52
TCOF1-202ENST00000377797 DZIP1LQ8IYY4 767 aaKnown RBP18.27■□□□□ 0.52
TCOF1-202ENST00000377797 ANP32BQ92688 251 aaKnown RBP18.27■□□□□ 0.51
TCOF1-202ENST00000377797 TEX14Q8IWB6 1497 aa18.27■□□□□ 0.51
TCOF1-202ENST00000377797 HMMRO75330 724 aa18.26■□□□□ 0.51
TCOF1-202ENST00000377797 GPRASP1Q5JY77 1395 aa18.24■□□□□ 0.51
TCOF1-202ENST00000377797 MBD5Q9P267 1494 aa18.24■□□□□ 0.51
TCOF1-202ENST00000377797 PANK1Q8TE04 598 aa18.23■□□□□ 0.51
TCOF1-202ENST00000377797 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.23■□□□□ 0.51
TCOF1-202ENST00000377797 DDX19BQ9UMR2 479 aa18.23■□□□□ 0.51
TCOF1-202ENST00000377797 CCDC9Q9Y3X0 531 aaKnown RBP18.23■□□□□ 0.51
TCOF1-202ENST00000377797 TESK2Q96S53 571 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms