RNA–Protein interactions for RNA: ENST00000356396.8

LSS-201, Transcript of lanosterol synthase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSS, Length 2,995 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSS-201ENST00000356396 SPHKAPQ2M3C7 1700 aa18.9■□□□□ 0.62
LSS-201ENST00000356396 PTPRTO14522 1441 aa18.9■□□□□ 0.62
LSS-201ENST00000356396 WAPLQ7Z5K2 1190 aa18.9■□□□□ 0.62
LSS-201ENST00000356396 MROH2AA6NES4 1674 aa18.89■□□□□ 0.61
LSS-201ENST00000356396 PER1O15534 1290 aaPredicted RBP18.89■□□□□ 0.61
LSS-201ENST00000356396 TRPM2O94759 1503 aa18.88■□□□□ 0.61
LSS-201ENST00000356396 SIGLEC1Q9BZZ2 1709 aa18.88■□□□□ 0.61
LSS-201ENST00000356396 NCKAP5LQ9HCH0 1330 aa18.88■□□□□ 0.61
LSS-201ENST00000356396 NEO1Q92859 1461 aa18.88■□□□□ 0.61
LSS-201ENST00000356396 PLEKHG5O94827 1062 aa18.88■□□□□ 0.61
LSS-201ENST00000356396 EFCAB6Q5THR3 1501 aa18.87■□□□□ 0.61
LSS-201ENST00000356396 ABCC3O15438 1527 aa18.87■□□□□ 0.61
LSS-201ENST00000356396 MAP3K4Q9Y6R4 1608 aa18.86■□□□□ 0.61
LSS-201ENST00000356396 TET3O43151 1660 aa18.86■□□□□ 0.61
LSS-201ENST00000356396 RICTORQ6R327 1708 aa18.85■□□□□ 0.61
LSS-201ENST00000356396 RNF17Q9BXT8 1623 aaKnown RBP18.85■□□□□ 0.61
LSS-201ENST00000356396 CCDC146Q8IYE0 955 aa18.85■□□□□ 0.61
LSS-201ENST00000356396 CARD14Q9BXL6 1004 aa18.84■□□□□ 0.61
LSS-201ENST00000356396 DEPDC5O75140 1603 aa18.84■□□□□ 0.61
LSS-201ENST00000356396 KNSTRNQ9Y448 316 aa18.84■□□□□ 0.61
LSS-201ENST00000356396 SLC26A8Q96RN1 970 aa18.82■□□□□ 0.6
LSS-201ENST00000356396 PRAM1Q96QH2 718 aa18.82■□□□□ 0.6
LSS-201ENST00000356396 SRPK2P78362 688 aaKnown RBP18.81■□□□□ 0.6
LSS-201ENST00000356396 VWDEQ8N2E2 1590 aa18.81■□□□□ 0.6
LSS-201ENST00000356396 CDCA7LQ96GN5 454 aa18.81■□□□□ 0.6
LSS-201ENST00000356396 PNISRQ8TF01 805 aaKnown RBP18.81■□□□□ 0.6
LSS-201ENST00000356396 MADDQ8WXG6 1647 aa18.8■□□□□ 0.6
LSS-201ENST00000356396 TXNDC2Q86VQ3 553 aa18.8■□□□□ 0.6
LSS-201ENST00000356396 CENPJQ9HC77 1338 aaPredicted RBP18.79■□□□□ 0.6
LSS-201ENST00000356396 POGKQ9P215 609 aa18.79■□□□□ 0.6
LSS-201ENST00000356396 GPRASP1Q5JY77 1395 aa18.79■□□□□ 0.6
LSS-201ENST00000356396 NEUROD2Q15784 382 aa18.78■□□□□ 0.6
LSS-201ENST00000356396 C14orf93Q9H972 538 aaKnown RBP18.78■□□□□ 0.6
LSS-201ENST00000356396 SYNMO15061 1565 aa18.77■□□□□ 0.6
LSS-201ENST00000356396 VGFO15240 615 aaPredicted RBP18.76■□□□□ 0.59
LSS-201ENST00000356396 KTN1Q86UP2 1357 aaKnown RBP18.76■□□□□ 0.59
LSS-201ENST00000356396 KIF13AQ9H1H9 1805 aa18.76■□□□□ 0.59
LSS-201ENST00000356396 SOX12O15370 315 aa18.75■□□□□ 0.59
LSS-201ENST00000356396 MYO5BQ9ULV0 1848 aa18.75■□□□□ 0.59
LSS-201ENST00000356396 ADAMTS8Q9UP79 889 aa18.75■□□□□ 0.59
LSS-201ENST00000356396 SCAF11Q99590 1463 aaKnown RBP18.75■□□□□ 0.59
LSS-201ENST00000356396 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.74■□□□□ 0.596e-8■□□□□ 9.7
LSS-201ENST00000356396 ZMYM3Q14202 1370 aa18.74■□□□□ 0.59
LSS-201ENST00000356396 MYBBP1AQ9BQG0 1328 aaKnown RBP18.74■□□□□ 0.59
LSS-201ENST00000356396 PLEKHH1Q9ULM0 1364 aa18.73■□□□□ 0.59
LSS-201ENST00000356396 GGNBP2Q9H3C7 697 aa18.73■□□□□ 0.59
LSS-201ENST00000356396 KIF1BO60333 1816 aa18.73■□□□□ 0.59
LSS-201ENST00000356396 PPM1GO15355 546 aaPredicted RBP18.72■□□□□ 0.59
LSS-201ENST00000356396 CAMSAP1Q5T5Y3 1602 aa18.72■□□□□ 0.59
LSS-201ENST00000356396 CFAP74Q9C0B2 1584 aa18.72■□□□□ 0.59
LSS-201ENST00000356396 AMER1Q5JTC6 1135 aaPredicted RBP18.72■□□□□ 0.59
LSS-201ENST00000356396 RRP7AQ9Y3A4 280 aaKnown RBP18.72■□□□□ 0.59
LSS-201ENST00000356396 NEFLP07196 543 aa18.7■□□□□ 0.58
LSS-201ENST00000356396 PPP2R1AP30153 589 aa18.7■□□□□ 0.58
LSS-201ENST00000356396 LTKP29376 864 aa18.69■□□□□ 0.58
LSS-201ENST00000356396 CLTCQ00610 1675 aaKnown RBP18.69■□□□□ 0.58
LSS-201ENST00000356396 SLC52A1Q9NWF4 448 aa18.69■□□□□ 0.58
LSS-201ENST00000356396 EIF2AK4Q9P2K8 1649 aaKnown RBP18.69■□□□□ 0.58
LSS-201ENST00000356396 ZRANB1Q9UGI0 708 aa18.68■□□□□ 0.58
LSS-201ENST00000356396 PLIN1O60240 522 aa18.68■□□□□ 0.58
LSS-201ENST00000356396 NLRP13Q86W25 1043 aa18.67■□□□□ 0.58
LSS-201ENST00000356396 ERVK-7P63135 1459 aa18.67■□□□□ 0.58
LSS-201ENST00000356396 B4GALNT3Q6L9W6 998 aa18.67■□□□□ 0.58
LSS-201ENST00000356396 PIK3C2GO75747 1445 aa18.67■□□□□ 0.58
LSS-201ENST00000356396 CABP1Q9NZU7 370 aa18.66■□□□□ 0.58
LSS-201ENST00000356396 ADGRB3O60242 1522 aa18.66■□□□□ 0.58
LSS-201ENST00000356396 GLI2P10070 1586 aa18.65■□□□□ 0.58
LSS-201ENST00000356396 RALBP1Q15311 655 aa18.64■□□□□ 0.57
LSS-201ENST00000356396 METP08581 1390 aa18.63■□□□□ 0.57
LSS-201ENST00000356396 PIK3C2BO00750 1634 aa18.63■□□□□ 0.57
LSS-201ENST00000356396 CDK19Q9BWU1 502 aa18.63■□□□□ 0.57
LSS-201ENST00000356396 MORC1Q86VD1 984 aa18.62■□□□□ 0.57
LSS-201ENST00000356396 EIF3AQ14152 1382 aaKnown RBP18.62■□□□□ 0.57
LSS-201ENST00000356396 NSD3Q9BZ95 1437 aa18.62■□□□□ 0.57
LSS-201ENST00000356396 LMTK2Q8IWU2 1503 aa18.61■□□□□ 0.57
LSS-201ENST00000356396 PARD3Q8TEW0 1356 aa18.61■□□□□ 0.57
LSS-201ENST00000356396 DMRT2Q9Y5R5 561 aa18.61■□□□□ 0.57
LSS-201ENST00000356396 WDR43Q15061 677 aaKnown RBP eCLIP18.6■□□□□ 0.575e-11■□□□□ 10.1
LSS-201ENST00000356396 POLR1AO95602 1720 aaPredicted RBP18.59■□□□□ 0.57
LSS-201ENST00000356396 NEXMIFQ5QGS0 1516 aa18.59■□□□□ 0.57
LSS-201ENST00000356396 PELP1Q8IZL8 1130 aaKnown RBP18.59■□□□□ 0.57
LSS-201ENST00000356396 APAF1O14727 1248 aa18.59■□□□□ 0.57
LSS-201ENST00000356396 ZBED9Q6R2W3 1325 aa18.59■□□□□ 0.57
LSS-201ENST00000356396 SKAP1Q86WV1 359 aa18.58■□□□□ 0.57
LSS-201ENST00000356396 PREX1Q8TCU6 1659 aa18.58■□□□□ 0.56
LSS-201ENST00000356396 RIMS2Q9UQ26 1411 aa18.57■□□□□ 0.56
LSS-201ENST00000356396 MTHFSP49914 203 aa18.57■□□□□ 0.56
LSS-201ENST00000356396 IQGAP1P46940 1657 aa18.57■□□□□ 0.56
LSS-201ENST00000356396 PMFBP1Q8TBY8 1022 aa18.57■□□□□ 0.56
LSS-201ENST00000356396 SPINK5Q9NQ38 1064 aaPredicted RBP18.57■□□□□ 0.56
LSS-201ENST00000356396 NUTM2GQ5VZR2 741 aa18.57■□□□□ 0.56
LSS-201ENST00000356396 CDCA8Q53HL2 280 aa18.56■□□□□ 0.56
LSS-201ENST00000356396 ADGRB1O14514 1584 aa18.55■□□□□ 0.56
LSS-201ENST00000356396 EVC2Q86UK5 1308 aa18.55■□□□□ 0.56
LSS-201ENST00000356396 PPLO60437 1756 aa18.55■□□□□ 0.56
LSS-201ENST00000356396 MYOM2P54296 1465 aa18.55■□□□□ 0.56
LSS-201ENST00000356396 U2SURPO15042 1029 aaKnown RBP18.54■□□□□ 0.56
LSS-201ENST00000356396 ASXL1Q8IXJ9 1541 aa18.54■□□□□ 0.56
LSS-201ENST00000356396 A2ML1A8K2U0 1454 aa18.53■□□□□ 0.56
LSS-201ENST00000356396 RPGRIP1LQ68CZ1 1315 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms