RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 TEX13BQ9BXU2 312 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 TMEM245Q9H330 911 aa4.9□□□□□ -1.63
SCN1A-220ENST00000641603 NEDD4P46934 1319 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 C5orf60A6NFR6 353 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NBPF26B4DH59 902 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PSTPIP1O43586 416 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CAMTA2O94983 1202 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ARL4AP40617 200 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CDK16Q00536 496 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PKN2Q16513 984 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MPRIPQ6WCQ1 1025 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 EXOC3L1Q86VI1 746 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 DGKHQ86XP1 1220 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SAMD3Q8N6K7 520 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 OR6Y1Q8NGX8 325 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 IRGQQ8WZA9 623 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CCDC85AQ96PX6 553 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CRNNQ9UBG3 495 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TPRKBQ9Y3C4 175 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 GTPBP10A4D1E9 387 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 LRRC10BA6NIK2 292 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 AKAP10O43572 662 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SORBS3O60504 671 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 LDHBP07195 334 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 DRD4P21917 467 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PRIM2P49643 509 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 RSBN1Q5VWQ0 802 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM67Q6ZTA4 783 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NUP93Q8N1F7 819 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM39Q9HCM9 518 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ATPIF1Q9UII2 106 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 FBXO2Q9UK22 296 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 USTQ9Y2C2 406 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 DENND4BO75064 1496 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 GZMAP12544 262 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MMP13P45452 471 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MXI1P50539 228 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF844Q08AG5 666 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 THEMIS2Q5TEJ8 643 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SHC4Q6S5L8 630 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PIK3C3Q8NEB9 887 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 BLOC1S5Q8TDH9 187 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ASAP3Q8TDY4 903 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 OTUB1Q96FW1 271 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ZBBXA8MT70 800 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 C2CD2LO14523 706 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TRMUO75648 421 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 RASA2Q15283 850 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ARHGEF16Q5VV41 709 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 IFNL3Q8IZI9 196 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MIGA1Q8NAN2 632 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 E2F7Q96AV8 911 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SUCLG2Q96I99 432 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MLPHQ9BV36 600 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 STK33Q9BYT3 514 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TMEM247A6NEH6 219 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MAGEC1O60732 1142 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 USP1O94782 785 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NTRK1P04629 796 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CA8P35219 290 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PPIL2Q13356 520 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 LVRNQ6Q4G3 990 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ERO1BQ86YB8 467 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CAMK1DQ8IU85 385 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ARHGEF19Q8IW93 802 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MB21D2Q8IYB1 491 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 BBS5Q8N3I7 341 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SRBD1Q8N5C6 995 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TSPAN14Q8NG11 270 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF564Q8TBZ8 553 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 CKAP2Q8WWK9 683 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 UBXN6Q9BZV1 441 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 AASDHPPTQ9NRN7 309 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MKL2Q9ULH7 1088 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PNPLA6Q8IY17 1366 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PDZK1P1A8MUH7 402 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MTSS1O43312 755 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ADD1P35611 737 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PDIA2Q13087 525 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MZT2BQ6NZ67 158 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 RAPH1Q70E73 1250 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 GSPT2Q8IYD1 628 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 MICU2Q8IYU8 434 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 RTKN2Q8IZC4 609 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 AMER2Q8N7J2 671 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TMEM35BQ8NCS4 154 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 UNC13BO14795 1591 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NEXMIFQ5QGS0 1516 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ENO1P06733 434 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 EIF4A1P60842 406 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 NCAPHQ15003 741 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 RABL6Q3YEC7 729 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ZBED8Q8IZ13 594 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 KIF2BQ8N4N8 673 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 UHMK1Q8TAS1 419 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 ACSBG1Q96GR2 724 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 BDH2Q9BUT1 245 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 SPATA16Q9BXB7 569 aa4.89□□□□□ -1.63
SCN1A-220ENST00000641603 PAIP1Q9H074 479 aaKnown RBP4.89□□□□□ -1.63
SCN1A-220ENST00000641603 TMEM9Q9P0T7 183 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms