RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 PIGRP01833 764 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 KRT19P08727 400 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 ZNF286BP0CG31 522 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 TRIP13Q15645 432 aaPredicted RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 IER5Q5VY09 327 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 ENOSF1Q7L5Y1 443 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 SLC13A5Q86YT5 568 aaPredicted RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 NAP1L3Q99457 506 aaPredicted RBP11.34□□□□□ -0.59
CUX1-221ENST00000622516 WNT8AQ9H1J5 351 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 TMEM134Q9H6X4 195 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 UVRAGQ9P2Y5 699 aa11.34□□□□□ -0.59
CUX1-221ENST00000622516 RWDD2BP57060 319 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 RPL7AP62424 266 aaKnown RBP11.33□□□□□ -0.6
CUX1-221ENST00000622516 PPIL2Q13356 520 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 PDCLQ13371 301 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 MAP1SQ66K74 1059 aaPredicted RBP11.33□□□□□ -0.6
CUX1-221ENST00000622516 CCDC62Q6P9F0 684 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 KCNH4Q9UQ05 1017 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 DNAJC25-GNG10A0A024R161 153 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 CCDC66A2RUB6 948 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 PHF2O75151 1096 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 MTA2O94776 668 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 TCF4P15884 667 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 OSBPP22059 807 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 PTGIRP43119 386 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 RPL21P46778 160 aaKnown RBP11.33□□□□□ -0.6
CUX1-221ENST00000622516 RAP1GAPP47736 663 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 GNGT1P63211 74 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 GUCY1A3Q02108 690 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 ZNF568Q3ZCX4 644 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 ATP13A4Q4VNC1 1196 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 DUPD1Q68J44 220 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 ARMCX2Q7L311 632 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 TMC3Q7Z5M5 1100 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 CCDC50Q8IVM0 306 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 ZBTB8OSQ8IWT0 167 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 EFCAB13Q8IY85 973 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 MREGQ8N565 214 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 ZNF606Q8WXB4 792 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 SLC10A4Q96EP9 437 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 FMO2Q99518 471 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 CCDC113Q9H0I3 377 aa11.33□□□□□ -0.6
CUX1-221ENST00000622516 DIS3Q9Y2L1 958 aaKnown RBP11.33□□□□□ -0.6
CUX1-221ENST00000622516 SMIM23A6NLE4 172 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 DCDC2CA8MYV0 355 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 KIAA0391O15091 583 aaKnown RBP11.32□□□□□ -0.6
CUX1-221ENST00000622516 VTNP04004 478 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 CYP1A1P04798 512 aaPredicted RBP11.32□□□□□ -0.6
CUX1-221ENST00000622516 CXCL8P10145 99 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 VPS41P49754 854 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 IRAK1P51617 712 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 BRSK2Q8IWQ3 736 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ABRAQ8N0Z2 381 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ACSF2Q96CM8 615 aaPredicted RBP11.32□□□□□ -0.6
CUX1-221ENST00000622516 CAPS2Q9BXY5 557 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 IMPG2Q9BZV3 1241 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 CHST7Q9NS84 486 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 RSPH14Q9UHP6 348 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 GINS2Q9Y248 185 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 INSRRP14616 1297 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 TMOD1P28289 359 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ADCYAP1R1P41586 468 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 CDH8P55286 799 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 TAS2R40P59535 323 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 NOMO3P69849 1222 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 CENPCQ03188 943 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 SLC20A2Q08357 652 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ZNF844Q08AG5 666 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 TCEAL1Q15170 157 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ZFYVE27Q5T4F4 411 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ATF7IP2Q5U623 682 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 MON1BQ7L1V2 547 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 ANKS1BQ7Z6G8 1248 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 PRUNE1Q86TP1 453 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 C1orf131Q8NDD1 294 aaKnown RBP11.32□□□□□ -0.6
CUX1-221ENST00000622516 CPB2Q96IY4 423 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 RAB17Q9H0T7 212 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 POLIQ9UNA4 740 aa11.32□□□□□ -0.6
CUX1-221ENST00000622516 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 BHMG1C9JSJ3 638 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 H0YGN5 161 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ABLIM1O14639 778 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 TLR3O15455 904 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 ASS1P00966 412 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 SHBGP04278 402 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 CTNNA2P26232 953 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 EFNA5P52803 228 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 MAMLD1Q13495 774 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 TRPC3Q13507 836 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 MXD4Q14582 209 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 TTLL4Q14679 1199 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 SIX1Q15475 284 aaPredicted RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 CYP4A22Q5TCH4 519 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 ZPBP2Q6X784 338 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 FASTKD5Q7L8L6 764 aaKnown RBP11.31□□□□□ -0.6
CUX1-221ENST00000622516 CCDC25Q86WR0 208 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 LRRC45Q96CN5 670 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 FAM167AQ96KS9 214 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 FAM114A2Q9NRY5 505 aa11.31□□□□□ -0.6
CUX1-221ENST00000622516 CISHQ9NSE2 258 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms