RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 OR10T2Q8NGX3 314 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 RSPH1Q8WYR4 309 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 ZNF707Q96C28 371 aaPredicted RBP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 AGPAT3Q9NRZ7 376 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 FAM13BQ9NYF5 915 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 HSPBP1Q9NZL4 362 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 CD207Q9UJ71 328 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 POLIQ9UNA4 740 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 LZTS1Q9Y250 596 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 CCDC195A0A1B0GUA6 201 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 CCL16O15467 120 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 ATP2C2O75185 946 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 DLATP10515 647 aaKnown RBP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 MCM4P33991 863 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 YARSP54577 528 aaKnown RBP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 PCBP1Q15365 356 aaKnown RBP eCLIP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 RNF19BQ6ZMZ0 732 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 BORCS6Q96GS4 357 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 TMEM175Q9BSA9 504 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 TTPALQ9BTX7 342 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 RPF1Q9H9Y2 349 aaKnown RBP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 TMLHEQ9NVH6 421 aa6.19□□□□□ -1.42
CPNE3-208ENST00000614678 MORC2Q9Y6X9 1032 aaPredicted RBP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 MTCL1Q9Y4B5 1905 aaKnown RBP6.19□□□□□ -1.42
CPNE3-208ENST00000614678 C2CD4DB7Z1M9 353 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 PRPF40AO75400 957 aaKnown RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 RPN1P04843 607 aaKnown RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ITGB3P05106 788 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 URODP06132 367 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 CLTAP09496 248 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 GPR15P49685 360 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 LILRA4P59901 499 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 SMAD2Q15796 467 aaKnown RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 PSMD5Q16401 504 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 SLC5A9Q2M3M2 681 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 C9orf57Q5W0N0 161 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ARMCX5Q6P1M9 558 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 LILRA6Q6PI73 481 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ATAD1Q8NBU5 361 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ZNF507Q8TCN5 953 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ING5Q8WYH8 240 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 TIPINQ9BVW5 301 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 KCTD10Q9H3F6 313 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 MMRN2Q9H8L6 949 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 NGRNQ9NPE2 291 aaKnown RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 RBAKQ9NYW8 714 aaPredicted RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 PCDHA5Q9Y5H7 936 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 IRAK3Q9Y616 596 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 TSC2P49815 1807 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 FAM170AA1A519 330 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 FGFR3P22607 806 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 POLR2BP30876 1174 aaKnown RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 CCR2P41597 374 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 UBE3AQ05086 875 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 USP41Q3LFD5 358 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 C1orf220Q5T0J3 134 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 CCDC65Q8IXS2 484 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 CEP57L1Q8IYX8 460 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 GJD3Q8N144 294 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 SLC7A14Q8TBB6 771 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 TCEAL4Q96EI5 215 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ACCSQ96QU6 501 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 HERC2P3Q9BVR0 1158 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 COLEC11Q9BWP8 271 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 LMAN2LQ9H0V9 348 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ST6GALNAC4Q9H4F1 302 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 UBN1Q9NPG3 1134 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 NUB1Q9Y5A7 615 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 NCANO14594 1321 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 KRT19P08727 400 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 LMO2P25791 158 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ROR1Q01973 937 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 PPP2R3AQ06190 1150 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 STXBP5Q5T5C0 1151 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 WSCD1Q658N2 575 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 SPOPLQ6IQ16 392 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 GRASPQ7Z6J2 395 aaPredicted RBP6.18□□□□□ -1.42
CPNE3-208ENST00000614678 ITFG1Q8TB96 612 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 SUSD6Q92537 303 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 FBXL18Q96ME1 805 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 MED15Q96RN5 788 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 PI4K2AQ9BTU6 479 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 FBXL5Q9UKA1 691 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 COG5Q9UP83 839 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 F5P12259 2224 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 SF3B1O75533 1304 aaKnown RBP eCLIP6.18□□□□□ -1.426e-6■■■■■ 103.4
CPNE3-208ENST00000614678 CACNA1HO95180 2353 aa6.18□□□□□ -1.42
CPNE3-208ENST00000614678 FAM237AA0A1B0GTK4 181 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 TRIM49P0CI25 452 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 TRIM49CP0CI26 452 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 RAP1GAPP47736 663 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 TMEM132DQ14C87 1099 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 SPATA1Q5VX52 437 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 OSTM1Q86WC4 334 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 HS6ST3Q8IZP7 471 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 PYM1Q9BRP8 204 aaKnown RBP6.17□□□□□ -1.42
CPNE3-208ENST00000614678 ANP32EQ9BTT0 268 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 DPP3Q9NY33 737 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 LIMD1Q9UGP4 676 aa6.17□□□□□ -1.42
CPNE3-208ENST00000614678 PCDHB13Q9Y5F0 798 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms