RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ODF2LQ9ULJ1 636 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 TBX20Q9UMR3 447 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 HPSEQ9Y251 543 aa15.17■□□□□ 0.02
CLN3-235ENST00000568497 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.17■□□□□ 0.02
CLN3-235ENST00000568497 PATJQ8NI35 1801 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 CCDC195A0A1B0GUA6 201 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.16■□□□□ 0.02
CLN3-235ENST00000568497 GCNT3O95395 438 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 CNPP09543 421 aaKnown RBP15.16■□□□□ 0.02
CLN3-235ENST00000568497 PDIA4P13667 645 aaKnown RBP15.16■□□□□ 0.02
CLN3-235ENST00000568497 CMA1P23946 247 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 RAB27AP51159 221 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 GUCY2FP51841 1108 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 EFNA5P52803 228 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 SMTNP53814 917 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 SPEM2Q0P670 501 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 ADALQ6DHV7 355 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 ELMSAN1Q6PJG2 1045 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 IQUBQ8NA54 791 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 NETO1Q8TDF5 533 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 HASPINQ8TF76 798 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 SMG7Q92540 1137 aaKnown RBP15.16■□□□□ 0.02
CLN3-235ENST00000568497 PGBD4Q96DM1 585 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 B3GALT6Q96L58 329 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 NTPCRQ9BSD7 190 aaKnown RBP15.16■□□□□ 0.02
CLN3-235ENST00000568497 TIPINQ9BVW5 301 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 TRAIPQ9BWF2 469 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 VN1R3Q9BXE9 311 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 TRIM9Q9C026 710 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 PIDD1Q9HB75 910 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 GOLGA2P5Q9HBQ8 144 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 PARD6AQ9NPB6 346 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 ZSCAN32Q9NX65 697 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 LARSQ9P2J5 1176 aaKnown RBP15.16■□□□□ 0.02
CLN3-235ENST00000568497 ANGPTL2Q9UKU9 493 aa15.16■□□□□ 0.02
CLN3-235ENST00000568497 DOCK8Q8NF50 2099 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 KANSL1LA0AUZ9 987 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 CASTOR2A6NHX0 329 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 C2CD2LO14523 706 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 PTGESO14684 152 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 INPPL1O15357 1258 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 HOXB3P14651 431 aaPredicted RBP15.15■□□□□ 0.02
CLN3-235ENST00000568497 SYKP43405 635 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 OR1G1P47890 313 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 STARD6P59095 220 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 STRN3Q13033 797 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 SNW1Q13573 536 aaKnown RBP15.15■□□□□ 0.02
CLN3-235ENST00000568497 LPAL2Q16609 132 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 TAS1R1Q7RTX1 841 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 NOC3LQ8WTT2 800 aaKnown RBP15.15■□□□□ 0.02
CLN3-235ENST00000568497 CCDC51Q96ER9 411 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 PRIMPOLQ96LW4 560 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 SLC2A4RGQ9NR83 387 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 KCND2Q9NZV8 630 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 STK39Q9UEW8 545 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 RAB23Q9ULC3 237 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 TNFSF13BQ9Y275 285 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 ATP6V1DQ9Y5K8 247 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 NUMBLQ9Y6R0 609 aa15.15■□□□□ 0.02
CLN3-235ENST00000568497 GOLGA8IPA6NC78 632 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 GOLGA8JA6NMD2 632 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 SLC30A4O14863 429 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 TBC1D4O60343 1298 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 RFPL2O75678 378 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 GALTP07902 379 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 TGM1P22735 817 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 PROZP22891 400 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 HOXD13P35453 343 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 LIG4P49917 911 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 HTR4Q13639 388 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 SCARA3Q6AZY7 606 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 TSSK4Q6SA08 328 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 MPZL3Q6UWV2 235 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 ZNF720Q7Z2F6 126 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 NELFCDQ8IXH7 590 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 ZBTB44Q8NCP5 570 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 CNNM3Q8NE01 707 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 URGCPQ8TCY9 931 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 C18orf25Q96B23 403 aaPredicted RBP15.14■□□□□ 0.01
CLN3-235ENST00000568497 FAM212AQ96EL1 285 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 ZMAT2Q96NC0 199 aaKnown RBP15.14■□□□□ 0.01
CLN3-235ENST00000568497 C7orf25Q9BPX7 421 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 SCAND2PQ9GZW5 306 aaPredicted RBP15.14■□□□□ 0.01
CLN3-235ENST00000568497 TNMDQ9H2S6 317 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 PCIF1Q9H4Z3 704 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 SLC39A2Q9NP94 309 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 MRPL17Q9NRX2 175 aaKnown RBP15.14■□□□□ 0.01
CLN3-235ENST00000568497 MARCH5Q9NX47 278 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 PKD1L2Q7Z442 2459 aa15.14■□□□□ 0.01
CLN3-235ENST00000568497 TDRD15B5MCY1 1934 aaKnown RBP15.13■□□□□ 0.01
CLN3-235ENST00000568497 COL4A3Q01955 1670 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 FRMD3A2A2Y4 597 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 HNRNPDLO14979 420 aaKnown RBP15.13■□□□□ 0.01
CLN3-235ENST00000568497 KLRC4O43908 158 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 LILRB3O75022 631 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 PPP1R37O75864 691 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 CXCL8P10145 99 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 SKIP12755 728 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 LAMP2P13473 410 aa15.13■□□□□ 0.01
CLN3-235ENST00000568497 ACOT2P49753 483 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms