RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 FUT8Q9BYC5 575 aa28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 AVENQ9NQS1 362 aaPredicted RBP28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 SETD4Q9NVD3 440 aa28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 ALG6Q9Y672 507 aa28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 NRCAMQ92823 1304 aa28.17■■■□□ 2.1
CCDC88C-205ENST00000553403 SPDYE4A6NLX3 237 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 MIF4GDA9UHW6 222 aaKnown RBP28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 PGRMC1O00264 195 aaKnown RBP28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 TSPAN1O60635 241 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 CXCL8P10145 99 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 GNA15P30679 374 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 OSTNP61366 133 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 SREBF2Q12772 1141 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 KAT2BQ92831 832 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 FAXDC2Q96IV6 333 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 SCLT1Q96NL6 688 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 PPP1R16BQ96T49 567 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 NUP85Q9BW27 656 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 ASB7Q9H672 318 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 L1RE1Q9UN81 338 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 THSD7BQ9C0I4 1608 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 ANK1P16157 1881 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 CLSTN1O94985 981 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 SMIM10L2AP0DMW4 78 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 SMIM10L2BP0DMW5 78 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 CYP2B6P20813 491 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 TNNC1P63316 161 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 PTPROQ16827 1216 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 KRT222Q8N1A0 295 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 ZNF564Q8TBZ8 553 aaPredicted RBP28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 CPB2Q96IY4 423 aa28.16■■■□□ 2.1
CCDC88C-205ENST00000553403 FAM155AB1AL88 458 aaPredicted RBP28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CSDE1O75534 798 aaKnown RBP28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 ERLIN2O94905 339 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CALCAP01258 141 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CYP2C19P33261 490 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CENPCQ03188 943 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CCL14Q16627 93 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 ZNF699Q32M78 642 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 SCARA3Q6AZY7 606 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 C8orf74Q6P047 294 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CCNI2Q6ZMN8 369 aaPredicted RBP28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 TMEM192Q8IY95 271 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 MCOLN2Q8IZK6 566 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 XYLT2Q9H1B5 865 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CARD9Q9H257 536 aa28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 CNOT8Q9UFF9 292 aaKnown RBP28.15■■■□□ 2.1
CCDC88C-205ENST00000553403 SMIM35A0A1B0GVV1 85 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 MBLAC1A4D2B0 266 aaPredicted RBP28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 LACTBL1A8MY62 500 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 MAP2K7O14733 419 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 HSPA8P11142 646 aaKnown RBP28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 CPT1AP50416 773 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 YWHAEP62258 255 aaKnown RBP28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 MFSD10Q14728 455 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 HDXQ7Z353 690 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 AP5M1Q9H0R1 490 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 ADAMTS10Q9H324 1103 aa28.14■■■□□ 2.1
CCDC88C-205ENST00000553403 A0A1B0GUA9 196 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 FAM170AA1A519 330 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 HAS3O00219 553 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 SASH3O75995 380 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 ECM2O94769 699 aaPredicted RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 CLUL1Q15846 466 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 ADPGKQ9BRR6 497 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 NOC2LQ9Y3T9 749 aaKnown RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 DOCK3Q8IZD9 2030 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 KAT6AQ92794 2004 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 TNPO2O14787 897 aaKnown RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 ATMINO43313 823 aaPredicted RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 CA12O43570 354 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 NSFP46459 744 aaKnown RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 PSEN2P49810 448 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 APBB1IPQ7Z5R6 666 aaPredicted RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 UBL4BQ8N7F7 174 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 VCPIP1Q96JH7 1222 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 GCOM2Q9BZD3 368 aaPredicted RBP28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 WNT8AQ9H1J5 351 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 STIM2Q9P246 746 aa28.13■■■□□ 2.09
CCDC88C-205ENST00000553403 CCDC188H7C350 402 aa28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 THAP12O43422 761 aa28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 TNFRSF8P28908 595 aa28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 RNASE9P60153 205 aaKnown RBP28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 MESDQ14696 234 aa28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 PCBP1Q15365 356 aaKnown RBP eCLIP28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 NAA35Q5VZE5 725 aa28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 CYFIP2Q96F07 1278 aa28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 DMGDHQ9UI17 866 aaKnown RBP28.12■■■□□ 2.09
CCDC88C-205ENST00000553403 MEFVO15553 781 aaPredicted RBP28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 NFICP08651 508 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 NOMO3P69849 1222 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 CRHR2Q13324 411 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 DCAF4L1Q3SXM0 396 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 JADE1Q6IE81 842 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 NT5DC4Q86YG4 428 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 HDAC7Q8WUI4 952 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 CISHQ9NSE2 258 aa28.11■■■□□ 2.09
CCDC88C-205ENST00000553403 GPR32O75388 356 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 COMTP21964 271 aa28.1■■■□□ 2.09
CCDC88C-205ENST00000553403 ATICP31939 592 aa28.1■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms