RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 ATP13A1Q9HD20 1204 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ETNK2Q9NVF9 386 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 CIDEBQ9UHD4 219 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 GIT1Q9Y2X7 761 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MRPL11Q9Y3B7 192 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 FMN2Q9NZ56 1722 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 GRIN2DO15399 1336 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MINK1Q8N4C8 1332 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 A8MVJ9 347 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 HNRNPCL2B2RXH8 293 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KCNJ18B7U540 433 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ARHGAP33O14559 1287 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 HNRNPCL1O60812 293 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 WEE2P0C1S8 567 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 AKR1B1P15121 316 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 CNTFP26441 200 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 RPL9P32969 192 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 PPARGP37231 505 aaPredicted RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 STAT2P52630 851 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TAP1Q03518 808 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 PICALMQ13492 652 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KCNJ12Q14500 433 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TIGD6Q17RP2 521 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KRT24Q2M2I5 525 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 TMEM164Q5U3C3 297 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 METTL2BQ6P1Q9 378 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 BRAPQ7Z569 592 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ANKRD53Q8N9V6 530 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 AVL9Q8NBF6 648 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 AGAP11Q8TF27 550 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MENTQ9BUN1 341 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ADAM33Q9BZ11 813 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ADAM19Q9H013 955 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 WNT5BQ9H1J7 359 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 MRM3Q9HC36 420 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 KCNQ5Q9NR82 932 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 GID8Q9NWU2 228 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 AIPL1Q9NZN9 384 aa9.38□□□□□ -0.91
VPS13D-212ENST00000543766 SRP68Q9UHB9 627 aaKnown RBP9.38□□□□□ -0.91
VPS13D-212ENST00000543766 ANKRD34BA5PLL1 514 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 ENPP3O14638 875 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 IFIT3O14879 490 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 GLRX3O76003 335 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 PROCP04070 461 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 CALB1P05937 261 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 TCEA1P23193 301 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 LIFRP42702 1097 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 MYLK3Q32MK0 819 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 KRT25Q7Z3Z0 450 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 FAM186BQ8IYM0 893 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 FUKQ8N0W3 1084 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 C12orf50Q8NA57 414 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 FBXO41Q8TF61 875 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 AKAP1Q92667 903 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 FAM89AQ96GI7 184 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 VPS39Q96JC1 886 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 HS6ST2Q96MM7 605 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 SAMD11Q96NU1 681 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 CRNKL1Q9BZJ0 848 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 CYP4F11Q9HBI6 524 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 E7EVH7 732 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 POTEB2H3BUK9 544 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 LMNAP02545 664 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 RAD52P43351 418 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 EIF4A1P60842 406 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 PGM2L1Q6PCE3 622 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 NME9Q86XW9 330 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 CHERPQ8IWX8 916 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 KIAA2013Q8IYS2 634 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 MRPS27Q92552 414 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 THAP11Q96EK4 314 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 SNF8Q96H20 258 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 PHACTR3Q96KR7 559 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 SLC2A13Q96QE2 648 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 TRIM45Q9H8W5 580 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 ABCB6Q9NP58 842 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 MBIPQ9NS73 344 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 RASSF9O75901 435 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 ADD1P35611 737 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 IFNAR2P48551 515 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 NFIL3Q16649 462 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 DUS1LQ6P1R4 473 aaKnown RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 HHIPL2Q6UWX4 724 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 HS2ST1Q7LGA3 356 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 C8orf33Q9H7E9 229 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 FNIP2Q9P278 1114 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF219Q9P2Y4 722 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 NFKBIL1Q9UBC1 381 aaPredicted RBP9.37□□□□□ -0.91
VPS13D-212ENST00000543766 CD2APQ9Y5K6 639 aa9.37□□□□□ -0.91
VPS13D-212ENST00000543766 WASLO00401 505 aaPredicted RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 CUTAO60888 179 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ADAMTS2O95450 1211 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 VAMP1P23763 118 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ATN1P54259 1190 aaPredicted RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 ME3Q16798 604 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 STARD8Q92502 1023 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 MED30Q96HR3 178 aa9.36□□□□□ -0.91
VPS13D-212ENST00000543766 LSM14BQ9BX40 385 aaKnown RBP9.36□□□□□ -0.91
VPS13D-212ENST00000543766 EHD4Q9H223 541 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms