RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ZNF227Q86WZ6 799 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 PROSER1Q86XN7 944 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 CERS3Q8IU89 383 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 FAM169BQ8N8A8 192 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 SMCR8Q8TEV9 937 aaPredicted RBP5.39□□□□□ -1.55
NUP54-206ENST00000508465 SH3TC2Q8TF17 1288 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 APPBP2Q92624 585 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 EXTL1Q92935 676 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 NEIL1Q96FI4 390 aaPredicted RBP5.39□□□□□ -1.55
NUP54-206ENST00000508465 FAM227BQ96M60 508 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 PARK7Q99497 189 aaKnown RBP5.39□□□□□ -1.55
NUP54-206ENST00000508465 FEZ1Q99689 392 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 TRIM8Q9BZR9 551 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 AS3MTQ9HBK9 375 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 ZCCHC17Q9NP64 241 aaKnown RBP5.39□□□□□ -1.55
NUP54-206ENST00000508465 CABP5Q9NP86 173 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 TMOD4Q9NZQ9 345 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 ZFP69BQ9UJL9 534 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 GABRQQ9UN88 632 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 AGTPBP1Q9UPW5 1226 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 EPB41L3Q9Y2J2 1087 aaPredicted RBP5.39□□□□□ -1.55
NUP54-206ENST00000508465 PTCH2Q9Y6C5 1203 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 SALL3Q9BXA9 1300 aa5.39□□□□□ -1.55
NUP54-206ENST00000508465 DNAH12Q6ZR08 3092 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 C19orf81C9J6K1 198 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 H0Y858 1186 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 SLC27A2O14975 620 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 NARSO43776 548 aaKnown RBP5.38□□□□□ -1.55
NUP54-206ENST00000508465 ZFYP08048 801 aaPredicted RBP5.38□□□□□ -1.55
NUP54-206ENST00000508465 EN2P19622 333 aaPredicted RBP5.38□□□□□ -1.55
NUP54-206ENST00000508465 GLRBP48167 497 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 TDO2P48775 406 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 IRX3P78415 501 aaPredicted RBP5.38□□□□□ -1.55
NUP54-206ENST00000508465 USP10Q14694 798 aaKnown RBP5.38□□□□□ -1.55
NUP54-206ENST00000508465 ARHGEF6Q15052 776 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 PRSS53Q2L4Q9 553 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 FAM47AQ5JRC9 791 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 VPS53Q5VIR6 699 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 C16orf86Q6ZW13 317 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 SKAP1Q86WV1 359 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 ZNF575Q86XF7 245 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 IFNL3Q8IZI9 196 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 SPICE1Q8N0Z3 855 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 EVI5LQ96CN4 794 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 ANAPC16Q96DE5 110 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 PAGR1Q9BTK6 254 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 KATNBL1Q9H079 304 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 TXNRD2Q9NNW7 524 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 BRCA2P51587 3418 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 ADGRA2Q96PE1 1338 aa5.38□□□□□ -1.55
NUP54-206ENST00000508465 COL2A1P02458 1487 aaPredicted RBP5.38□□□□□ -1.55
NUP54-206ENST00000508465 SIPA1L1O43166 1804 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 DOCK2Q92608 1830 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 CDK5RAP2Q96SN8 1893 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 MYH1P12882 1939 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 A0A0D9SFI3 127 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 FOXP2O15409 715 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 TBX1O43435 398 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 EEF2P13639 858 aaKnown RBP5.37□□□□□ -1.55
NUP54-206ENST00000508465 SDSP20132 328 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 ACO1P21399 889 aaKnown RBP5.37□□□□□ -1.55
NUP54-206ENST00000508465 HOXA7P31268 230 aaPredicted RBP5.37□□□□□ -1.55
NUP54-206ENST00000508465 GFRA1P56159 465 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 HERVK_113P62684 666 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 PRKCZQ05513 592 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 PABPC4Q13310 644 aaKnown RBP eCLIP5.37□□□□□ -1.55
NUP54-206ENST00000508465 SF1Q15637 639 aaKnown RBP5.37□□□□□ -1.55
NUP54-206ENST00000508465 SLC9C1Q4G0N8 1177 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 SBK1Q52WX2 424 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 CATSPERGQ6ZRH7 1159 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 C1orf210Q8IVY1 113 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 AMOTL1Q8IY63 956 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 FUKQ8N0W3 1084 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 STPG3Q8N7X2 389 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 TMEM145Q8NBT3 493 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 PIP4K2CQ8TBX8 421 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 RAET1EQ8TD07 263 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 CLEC4DQ8WXI8 215 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 NUP88Q99567 741 aaPredicted RBP5.37□□□□□ -1.55
NUP54-206ENST00000508465 JAM3Q9BX67 310 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 KIAA1683Q9H0B3 1180 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 IKZF4Q9H2S9 585 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 RPAP3Q9H6T3 665 aaPredicted RBP5.37□□□□□ -1.55
NUP54-206ENST00000508465 CLIP2Q9UDT6 1046 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 SWAP70Q9UH65 585 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 SLC45A1Q9Y2W3 748 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 NPFFR2Q9Y5X5 522 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 PHIPQ8WWQ0 1821 aa5.37□□□□□ -1.55
NUP54-206ENST00000508465 TNPO2O14787 897 aaKnown RBP5.36□□□□□ -1.55
NUP54-206ENST00000508465 ADCY3O60266 1144 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 PPFIA2O75334 1257 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 CNMDO75829 334 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 FGAP02671 866 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 FAHP16930 419 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 GNAT2P19087 354 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 VCAM1P19320 739 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 HOXD10P28358 340 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 GCLCP48506 637 aaPredicted RBP5.36□□□□□ -1.55
NUP54-206ENST00000508465 FLT3LGP49771 235 aa5.36□□□□□ -1.55
NUP54-206ENST00000508465 RGS19P49795 217 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms