RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 SCN1AP35498 2009 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 PPP1R3GB7ZBB8 358 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 EFEMP2O95967 443 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 ITGB3P05106 788 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 KRT19P08727 400 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 POLR2BP30876 1174 aaKnown RBP12.8□□□□□ -0.36
HPS4-214ENST00000485842 PPP1R2P41236 205 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 STX17P56962 302 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 DSG1Q02413 1049 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 ADAM9Q13443 819 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 MYBPC2Q14324 1141 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 NFIL3Q16649 462 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 RTP2Q5QGT7 225 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 ANKRD40Q6AI12 368 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 CENPPQ6IPU0 288 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 LLGL2Q6P1M3 1020 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.8□□□□□ -0.36
HPS4-214ENST00000485842 WDR49Q8IV35 697 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 GLYCTKQ8IVS8 523 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 FAM186BQ8IYM0 893 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 C1orf127Q8N9H9 656 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 PLEKHO2Q8TD55 490 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 DHTKD1Q96HY7 919 aaPredicted RBP12.8□□□□□ -0.36
HPS4-214ENST00000485842 MFSD14AQ96MC6 490 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 POP1Q99575 1024 aaKnown RBP12.8□□□□□ -0.36
HPS4-214ENST00000485842 TTPALQ9BTX7 342 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 INTS13Q9NVM9 706 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 CLDND1Q9NY35 253 aa12.8□□□□□ -0.36
HPS4-214ENST00000485842 ANO9A1A5B4 782 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 LRRIQ3A6PVS8 624 aaPredicted RBP12.79□□□□□ -0.36
HPS4-214ENST00000485842 CETN3O15182 167 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 LINC01565O15544 149 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 AKAP3O75969 853 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 KRT13P13646 458 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 RPL17P18621 184 aaKnown RBP12.79□□□□□ -0.36
HPS4-214ENST00000485842 LRRC63Q05C16 580 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 BFSP1Q12934 665 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 PAK1Q13153 545 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 PSMD5Q16401 504 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 DUSP6Q16828 381 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 DUOXA2Q1HG44 320 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 KIAA0319Q5VV43 1072 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 DSTYKQ6XUX3 929 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 CSGALNACT2Q8N6G5 542 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 SUSD3Q96L08 255 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 ZNF560Q96MR9 790 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 EMILIN2Q9BXX0 1053 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 GZF1Q9H116 711 aaPredicted RBP12.79□□□□□ -0.36
HPS4-214ENST00000485842 CHST7Q9NS84 486 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 ITGA11Q9UKX5 1188 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 AGAP1Q9UPQ3 857 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 SSX2IPQ9Y2D8 614 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 R3HCC1Q9Y3T6 440 aaKnown RBP12.79□□□□□ -0.36
HPS4-214ENST00000485842 IRAK3Q9Y616 596 aa12.79□□□□□ -0.36
HPS4-214ENST00000485842 BICDL2A1A5D9 508 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 PIRO00625 290 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 SPTLC1O15269 473 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 CLASP2O75122 1294 aaKnown RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 CLSTN1O94985 981 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 CNPP09543 421 aaKnown RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 TRIM49P0CI25 452 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 TRIM49CP0CI26 452 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 EPB41P11171 864 aaKnown RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 FGFR3P22607 806 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 KLRC2P26717 231 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 PSMC2P35998 433 aaKnown RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 NDUFV1P49821 464 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 TAF6P49848 677 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 LILRA4P59901 499 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 DLG4P78352 724 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 RBM10P98175 930 aaKnown RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 FKBP3Q00688 224 aaKnown RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 BIRC3Q13489 604 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 CCDC183Q5T5S1 534 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 SCARA3Q6AZY7 606 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 TRAPPC11Q7Z392 1133 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 EFHBQ8N7U6 833 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 PARD3BQ8TEW8 1205 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 TMEM174Q8WUU8 243 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 PIK3R5Q8WYR1 880 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 KLHL5Q96PQ7 755 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 CDCA3Q99618 268 aaPredicted RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 UBE2ZQ9H832 354 aaPredicted RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 TIMM13Q9Y5L4 95 aaPredicted RBP12.78□□□□□ -0.36
HPS4-214ENST00000485842 TSC2P49815 1807 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 PLXNA3P51805 1871 aa12.78□□□□□ -0.36
HPS4-214ENST00000485842 SYN3O14994 580 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 MAPK13O15264 365 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 TEX28O15482 410 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 LILRB3O75022 631 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 PHACTR2O75167 634 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 SLC34A2O95436 690 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 ADH1AP07327 375 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 ODC1P11926 461 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 PNPLA4P41247 253 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 VAMP7P51809 220 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 RBP5P82980 135 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 CREMQ03060 361 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 DPCR1Q3MIW9 517 aa12.77□□□□□ -0.37
HPS4-214ENST00000485842 SV2CQ496J9 727 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms