RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 HKR1P10072 659 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 CTXN1P60606 82 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 KIF23Q02241 960 aaPredicted RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 TAP1Q03518 808 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 CYP2A13Q16696 494 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 ABHD17BQ5VST6 288 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 FITM2Q8N6M3 262 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 Q8NA96 180 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 NTN5Q8WTR8 489 aaPredicted RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 FUBP1Q96AE4 644 aaKnown RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 COQ10AQ96MF6 247 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 REXO4Q9GZR2 422 aaKnown RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 UNKLQ9H9P5 680 aaKnown RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 ADARB2Q9NS39 739 aaKnown RBP4.38□□□□□ -1.71
VPS50-216ENST00000484954 TDP1Q9NUW8 608 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 ZNHIT2Q9UHR6 403 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 KCNE5Q9UJ90 142 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 SLC45A2Q9UMX9 530 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 PCDHB1Q9Y5F3 818 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 NOX1Q9Y5S8 564 aa4.38□□□□□ -1.71
VPS50-216ENST00000484954 MGST3O14880 152 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 ALAS1P13196 640 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 FDXRP22570 491 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 C21orf58P58505 322 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 CDC42EP1Q00587 391 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 SPDYE7PQ495Y7 208 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 MIGA2Q7L4E1 593 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 RSPH3Q86UC2 560 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 SSH1Q8WYL5 1049 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 COA7Q96BR5 231 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 BOD1Q96IK1 185 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 MRGPRX4Q96LA9 322 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 SMAD5Q99717 465 aaKnown RBP4.37□□□□□ -1.71
VPS50-216ENST00000484954 RIOX1Q9H6W3 641 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 GALNT9Q9HCQ5 603 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 TMEM74BQ9NUR3 256 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 TESQ9UGI8 421 aaKnown RBP4.37□□□□□ -1.71
VPS50-216ENST00000484954 MTO1Q9Y2Z2 717 aaKnown RBP4.37□□□□□ -1.71
VPS50-216ENST00000484954 MAST3O60307 1309 aa4.37□□□□□ -1.71
VPS50-216ENST00000484954 ARHGEF17Q96PE2 2063 aaPredicted RBP4.36□□□□□ -1.71
VPS50-216ENST00000484954 SHTN1A0MZ66 631 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 ZAR1LA6NP61 321 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 HAUS5O94927 633 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 AGFG2O95081 481 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 ZRANB2O95218 330 aaKnown RBP eCLIP4.36□□□□□ -1.71
VPS50-216ENST00000484954 ESRRBO95718 433 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 CD1AP06126 327 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 ZNF37AP17032 561 aaPredicted RBP4.36□□□□□ -1.71
VPS50-216ENST00000484954 AVPR1BP47901 424 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 VAV2P52735 878 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 CREMQ03060 361 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 PTPN21Q16825 1174 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 UTP14CQ5TAP6 766 aaKnown RBP4.36□□□□□ -1.71
VPS50-216ENST00000484954 NUP133Q8WUM0 1156 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 HDAC10Q969S8 669 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 BBC3Q96PG8 261 aaPredicted RBP4.36□□□□□ -1.71
VPS50-216ENST00000484954 R3HDMLQ9H3Y0 253 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 SAP30BPQ9UHR5 308 aaKnown RBP4.36□□□□□ -1.71
VPS50-216ENST00000484954 WASHC2CQ9Y4E1 1318 aa4.36□□□□□ -1.71
VPS50-216ENST00000484954 COL11A2P13942 1736 aaPredicted RBP4.35□□□□□ -1.71
VPS50-216ENST00000484954 LRRC14BA6NHZ5 514 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 ERN1O75460 977 aaKnown RBP4.35□□□□□ -1.71
VPS50-216ENST00000484954 SLC16A1P53985 500 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 MXRA7P84157 204 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 DSC2Q02487 901 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 TLE1Q04724 770 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 MPP3Q13368 585 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 PRR16Q569H4 304 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 EPHA10Q5JZY3 1008 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 ARMC6Q6NXE6 501 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 Q6ZNX1 250 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 PRIMA1Q86XR5 153 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 SIMC1Q8NDZ2 872 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 NSUN7Q8NE18 718 aaKnown RBP4.35□□□□□ -1.71
VPS50-216ENST00000484954 TMIEQ8NEW7 156 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 LRIG1Q96JA1 1093 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 CLPTM1LQ96KA5 538 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 KLHL32Q96NJ5 620 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 PNKPQ96T60 521 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 ASPSCR1Q9BZE9 553 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 CDYLQ9Y232 598 aa4.35□□□□□ -1.71
VPS50-216ENST00000484954 SGTAO43765 313 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 ITGB6P18564 788 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 CXCR5P32302 372 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 SIM1P81133 766 aaPredicted RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 MC2RQ01718 297 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 UAP1L1Q3KQV9 507 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 PABPC1LQ4VXU2 614 aaKnown RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 ZNF362Q5T0B9 420 aaPredicted RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 FOXR2Q6PJQ5 311 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 PNMA8AQ86V59 439 aaPredicted RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 ADGRG3Q86Y34 549 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 FAM43AQ8N2R8 423 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 SSH3Q8TE77 659 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 PTCD3Q96EY7 689 aaKnown RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 VRK1Q99986 396 aaPredicted RBP4.34□□□□□ -1.71
VPS50-216ENST00000484954 AIFM2Q9BRQ8 373 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 PCDH12Q9NPG4 1184 aa4.34□□□□□ -1.71
VPS50-216ENST00000484954 CASS4Q9NQ75 786 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms