RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 PNPLA7Q6ZV29 1317 aa5.14□□□□□ -1.59
USP40-209ENST00000452724 GOLGA6CA6NDK9 693 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 GOLGA6BA6NDN3 693 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 FTLP02792 175 aaPredicted RBP5.13□□□□□ -1.59
USP40-209ENST00000452724 HLA-DOAP06340 250 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 GOLGA6DP0CG33 693 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 NR4A1P22736 598 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 USP14P54578 494 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 MXRA7P84157 204 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 KHDC1Q4VXA5 237 aaKnown RBP5.13□□□□□ -1.59
USP40-209ENST00000452724 DACT2Q5SW24 774 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 DCBLD1Q8N8Z6 715 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 C3orf20Q8ND61 904 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 MAN1C1Q9NR34 630 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 GOLGA6AQ9NYA3 693 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 POGKQ9P215 609 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 HS3ST4Q9Y661 456 aa5.13□□□□□ -1.59
USP40-209ENST00000452724 TCRBV7S2A1N4TA0A589 114 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 H3BML4 177 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 KIAA0391O15091 583 aaKnown RBP5.12□□□□□ -1.59
USP40-209ENST00000452724 MARCH6O60337 910 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 ARIH2O95376 493 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 POMCP01189 267 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 ALDH2P05091 517 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 ATF3P18847 181 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 MALP21145 153 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 BMP5P22003 454 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 MAP2K6P52564 334 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 HK3P52790 923 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 NOGQ13253 232 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 UBE3BQ7Z3V4 1068 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 C14orf80Q86SX3 495 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 ZNF575Q86XF7 245 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 DENND1CQ8IV53 801 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 VRK3Q8IV63 474 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 CAMKK1Q8N5S9 505 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 RUNDC1Q96C34 613 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 FAM30AQ9NZY2 134 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 PCDHA3Q9Y5H8 950 aa5.12□□□□□ -1.59
USP40-209ENST00000452724 AHRRA9YTQ3 701 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 ERC2O15083 957 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 GRM6O15303 877 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 CTNND1O60716 968 aaKnown RBP5.11□□□□□ -1.59
USP40-209ENST00000452724 CD1AP06126 327 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 MTHFD1P11586 935 aaKnown RBP5.11□□□□□ -1.59
USP40-209ENST00000452724 ALAS1P13196 640 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 SMARCA1P28370 1054 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 IL12RB1P42701 662 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 AVPR1BP47901 424 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 NHLH2Q02577 135 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 SNAPC2Q13487 334 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 UBXN2BQ14CS0 331 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 GFOD2Q3B7J2 385 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 PABPC1LQ4VXU2 614 aaKnown RBP5.11□□□□□ -1.59
USP40-209ENST00000452724 CCDC157Q569K6 752 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 SLC4A10Q6U841 1118 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 HEATR3Q7Z4Q2 680 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 SYT12Q8IV01 421 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 ZBTB34Q8NCN2 500 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 SUPT20HQ8NEM7 779 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 TTC8Q8TAM2 541 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 CGRRF1Q99675 332 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 ACO2Q99798 780 aaKnown RBP5.11□□□□□ -1.59
USP40-209ENST00000452724 KRTAP17-1Q9BYP8 105 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 TOR3AQ9H497 397 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 ZNF768Q9H5H4 540 aaKnown RBP5.11□□□□□ -1.59
USP40-209ENST00000452724 AKIP1Q9NQ31 210 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 LMBRD1Q9NUN5 540 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 NR2E3Q9Y5X4 410 aa5.11□□□□□ -1.59
USP40-209ENST00000452724 DRGXA6NNA5 263 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 VSTM5A8MXK1 200 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 NT5C1B-RDH14C9J2C7 533 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 F2RL2O00254 374 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 NCR1O76036 304 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 LMNAP02545 664 aaKnown RBP5.1□□□□□ -1.59
USP40-209ENST00000452724 MYBP10242 640 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 CHN2P52757 468 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 RNASE9P60153 205 aaKnown RBP5.1□□□□□ -1.59
USP40-209ENST00000452724 ARHGAP29Q52LW3 1261 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 HECTD2Q5U5R9 776 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 LCORLQ8N3X6 602 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 IL17RDQ8NFM7 739 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 NLGN4YQ8NFZ3 816 aaPredicted RBP5.1□□□□□ -1.59
USP40-209ENST00000452724 PPP1R35Q8TAP8 253 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 CDK5RAP3Q96JB5 506 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 PHACTR3Q96KR7 559 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 FAM167AQ96KS9 214 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 C1orf112Q9NSG2 853 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 FBXO34Q9NWN3 711 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 ABCF2Q9UG63 623 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 STXBP5LQ9Y2K9 1186 aa5.1□□□□□ -1.59
USP40-209ENST00000452724 CENPVL1A0A0U1RR11 272 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 GRID2IPA4D2P6 1211 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 TMEM200CA6NKL6 621 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 LEFTY2O00292 366 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 UBXN7O94888 489 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 HAUS5O94927 633 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 NDUFA10O95299 355 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 NUDT3O95989 172 aa5.09□□□□□ -1.59
USP40-209ENST00000452724 SBK3P0C264 359 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms