RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 PHKG1Q16816 387 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 DCAF6Q58WW2 860 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 GNASQ5JWF2 1037 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 MMS22LQ6ZRQ5 1243 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 TSPAN17Q96FV3 270 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 CCDC90BQ9GZT6 254 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ARHGEF38Q9NXL2 777 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 RTN2O75298 545 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 CD4P01730 458 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 CDC27P30260 824 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 PMS2P54278 862 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 SMTNL2Q2TAL5 461 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 SV2CQ496J9 727 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 GLB1LQ6UWU2 654 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 C19orf81C9J6K1 198 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 ZNF263O14978 683 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 CYP26A1O43174 497 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 MYBP10242 640 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 SARM1Q6SZW1 724 aa12.67□□□□□ -0.38
CCDC88A-207ENST00000436346 MAN1A2O60476 641 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 OR1G1P47890 313 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 CLCN6P51797 869 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 CD274Q9NZQ7 290 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 EEF2KO00418 725 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 ALDH18A1P54886 795 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 MAP3K10Q02779 954 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 TJAP1Q5JTD0 557 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 OSBPL5Q9H0X9 879 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 AGAP1Q9UPQ3 857 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 MAGEB2O15479 319 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 AMHR2Q16671 573 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 NDE1Q9NXR1 346 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 AURKCQ9UQB9 309 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 GTF2A2P52657 109 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 ELAC2Q9BQ52 826 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 CYP2B6P20813 491 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 ATF7IP2Q5U623 682 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 PLA2G4FQ68DD2 849 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 TBC1D16Q8TBP0 767 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 FAM96AQ9H5X1 160 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 C3orf70A6NLC5 250 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 DGAT1O75907 488 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 MGAT5BQ3V5L5 792 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 ORC4O43929 436 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 NPTXRO95502 500 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 CLEC10AQ8IUN9 316 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 STX19Q8N4C7 294 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 LINC00116Q8NCU8 138 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 TIPINQ9BVW5 301 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 PRRC2BQ5JSZ5 2229 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 PDHA1P08559 390 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 FAM180AQ6UWF9 173 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 FAM84BQ96KN1 310 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 TMEM161AQ9NX61 479 aa12.66□□□□□ -0.38
CCDC88A-207ENST00000436346 PCSK1P29120 753 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CENPAP49450 140 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 FCGRTP55899 365 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 HUNKP57058 714 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 SESN2P58004 480 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 NLRP11P59045 1033 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 NCALDP61601 193 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 ANKMY2Q8IV38 441 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CINPQ9BW66 212 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 ATG2BQ96BY7 2078 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 E2F8A0AVK6 867 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 GOLGA8RI6L899 631 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CYP2C19P33261 490 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CAPZA2P47755 286 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 LAMB3Q13751 1172 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 NCAPHQ15003 741 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 GOLGA7BQ2TAP0 167 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 SEPT8Q92599 483 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 GSG1L2A8MUP6 293 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 ATP5HO75947 161 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 APEX2Q9UBZ4 518 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 MED14O60244 1454 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 RNF103-CHMP3A0A140T963 221 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 VGLL3A8MV65 326 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 UBXN8O00124 270 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 ALDH1A2O94788 518 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 IMPDH2P12268 514 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 TRIML2Q8N7C3 387 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 ABCB6Q9NP58 842 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 ZBTB12Q9Y330 459 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CSE1LP55060 971 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 MB21D2Q8IYB1 491 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 LRRC74AQ0VAA2 488 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 RARS2Q5T160 578 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 EFCAB12Q6NXP0 572 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 XPO7Q9UIA9 1087 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CCDC78A2IDD5 438 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 CTIFO43310 598 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 NCAM1P13591 858 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 IZUMO3Q5VZ72 239 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 C17orf80Q9BSJ5 609 aa12.65□□□□□ -0.38
CCDC88A-207ENST00000436346 NBPF20Q3BBV1 942 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 SGO1Q5FBB7 561 aa12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 NBPF10Q6P3W6 841 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-207ENST00000436346 NUDT12Q9BQG2 462 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms