RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 RLIMQ9NVW2 624 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 DKK2Q9UBU2 259 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 ABCF2Q9UG63 623 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 STXBP5LQ9Y2K9 1186 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 NR2E3Q9Y5X4 410 aa7.25□□□□□ -1.25
CCDC88A-206ENST00000430086 A0A1B0GTW7 788 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 ERC2O15083 957 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 NCR1O76036 304 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 CFIP05156 583 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 BMPR1AP36894 532 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 NOMO3P69849 1222 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 SLFN5Q08AF3 891 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 BEAN1Q3B7T3 259 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 CCDC93Q567U6 631 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 NOMO2Q5JPE7 1267 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 UTP14CQ5TAP6 766 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 PDSS2Q86YH6 399 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 CAMKK1Q8N5S9 505 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 HAS1Q92839 578 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 TSR2Q969E8 191 aaKnown RBP7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 ZNF341Q9BYN7 854 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 PNPOQ9NVS9 261 aa7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 FEZ2Q9UHY8 353 aaPredicted RBP7.24□□□□□ -1.25
CCDC88A-206ENST00000430086 TMEM200CA6NKL6 621 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 NARSO43776 548 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 EIF5BO60841 1220 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 AGFG2O95081 481 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 HLA-DOAP06340 250 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 LAG3P18627 525 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 TACR2P21452 398 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 ARMC6Q6NXE6 501 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 MAPKAPK5Q8IW41 473 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 AOPEPQ8N6M6 819 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 ZNF483Q8TF39 744 aaPredicted RBP7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 MARS2Q96GW9 593 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 PNKPQ96T60 521 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 MRPL46Q9H2W6 279 aaKnown RBP7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 NRDE2Q9H7Z3 1164 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 SLC2A4RGQ9NR83 387 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 GABBR1Q9UBS5 961 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 ZDHHC8Q9ULC8 765 aa7.23□□□□□ -1.25
CCDC88A-206ENST00000430086 GOLGA6CA6NDK9 693 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 GOLGA6BA6NDN3 693 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 NPIPB8E9PQR5 432 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 CTNND1O60716 968 aaKnown RBP7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 UBXN7O94888 489 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 ELANEP08246 267 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 GNAI3P08754 354 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 GOLGA6DP0CG33 693 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 FGFR4P22455 802 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 PIK3CGP48736 1102 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 GNAI1P63096 354 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 OCA2Q04671 838 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 PLS1Q14651 629 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 CCDC157Q569K6 752 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 MRGPREQ86SM8 312 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 FMNL3Q8IVF7 1028 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 Q8N1X5 172 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 SYNE4Q8N205 404 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 TMEM132CQ8N3T6 1108 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 KLHDC4Q8TBB5 520 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 MED15Q96RN5 788 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 GOLGA6AQ9NYA3 693 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 CFAP97Q9P2B7 532 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 HS3ST4Q9Y661 456 aa7.22□□□□□ -1.25
CCDC88A-206ENST00000430086 A0A088AWK7 358 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 CCDC78A2IDD5 438 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 PRSS29PA6NIE9 313 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 H3BUI4 141 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 B3GALT2O43825 422 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 TUSC2O75896 110 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 ZNF202O95125 648 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 PARNO95453 639 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 FCER1AP12319 257 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 C6P13671 934 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 MAKP20794 623 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 HTR1BP28222 390 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 KIF22Q14807 665 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 B3GNTL1Q67FW5 361 aaPredicted RBP7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 IGFL4Q6B9Z1 124 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 FAM43AQ8N2R8 423 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 ZBTB34Q8NCN2 500 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 PLBD2Q8NHP8 589 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 PPP1R35Q8TAP8 253 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 MTFMTQ96DP5 389 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 SLC35A4Q96G79 324 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 KLHL32Q96NJ5 620 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 ZSWIM1Q9BR11 485 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 LRFN3Q9BTN0 628 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 C1orf43Q9BWL3 253 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 KRTAP4-2Q9BYR5 136 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 BRD9Q9H8M2 597 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 C1orf112Q9NSG2 853 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 KCNE5Q9UJ90 142 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 SLC45A2Q9UMX9 530 aa7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 REXO2Q9Y3B8 237 aaKnown RBP7.21□□□□□ -1.26
CCDC88A-206ENST00000430086 FZD7O75084 574 aa7.2□□□□□ -1.26
CCDC88A-206ENST00000430086 NDUFA10O95299 355 aa7.2□□□□□ -1.26
CCDC88A-206ENST00000430086 MATN4O95460 622 aa7.2□□□□□ -1.26
CCDC88A-206ENST00000430086 GPANK1O95872 356 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms