RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 HERC6Q8IVU3 1022 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 OR5B17Q8NGF7 314 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 FAXDC2Q96IV6 333 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 CASD1Q96PB1 797 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 ERGIC2Q96RQ1 377 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 MMS19Q96T76 1030 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 CRACR2AQ9BSW2 395 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 LSM14BQ9BX40 385 aaKnown RBP10.86□□□□□ -0.67
CD44-207ENST00000425428 NUCKS1Q9H1E3 243 aaKnown RBP10.86□□□□□ -0.67
CD44-207ENST00000425428 MSRAQ9UJ68 235 aa10.86□□□□□ -0.67
CD44-207ENST00000425428 CASTOR2A6NHX0 329 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 MEIS3P2A8K0S8 358 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 H0YGN5 161 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 PTGESO14684 152 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 B3GAT3O94766 335 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 PPM1AP35813 382 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 ZNF75DP51815 510 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 KRT17Q04695 432 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 ZBTB6Q15916 424 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 WDR72Q3MJ13 1102 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 CBWD6Q4V339 395 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 CBWD3Q5JTY5 395 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 CBWD5Q5RIA9 395 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 C9orf57Q5W0N0 161 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 PPM1KQ8N3J5 372 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 C1orf127Q8N9H9 656 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 PLEKHO2Q8TD55 490 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 C18orf25Q96B23 403 aaPredicted RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 ZMAT2Q96NC0 199 aaKnown RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 ZNF558Q96NG5 402 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 NAP1L5Q96NT1 182 aaPredicted RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 SPAG5Q96R06 1193 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 INTS2Q9H0H0 1204 aaKnown RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 ZNHIT6Q9NWK9 470 aaKnown RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 TUBGCP4Q9UGJ1 667 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 DSEQ9UL01 958 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 COQ4Q9Y3A0 265 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 KIF4AO95239 1232 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 NOP14P78316 857 aaKnown RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 RAB30Q15771 203 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 TCTN1Q2MV58 587 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 TRIM65Q6PJ69 517 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 TAS1R2Q8TE23 839 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 ZNF516Q92618 1163 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 TMEM169Q96HH4 297 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 FAM124BQ9H5Z6 455 aaPredicted RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 PLCB1Q9NQ66 1216 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 FAM207AQ9NSI2 230 aaPredicted RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 NXF1Q9UBU9 619 aaKnown RBP10.85□□□□□ -0.67
CD44-207ENST00000425428 APEX2Q9UBZ4 518 aa10.85□□□□□ -0.67
CD44-207ENST00000425428 KPNA7A9QM74 516 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 STAU1O95793 577 aaKnown RBP10.84□□□□□ -0.67
CD44-207ENST00000425428 PTMAP06454 111 aaKnown RBP10.84□□□□□ -0.67
CD44-207ENST00000425428 ODC1P11926 461 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 PON1P27169 355 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 CDC25BP30305 580 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 BMP8BP34820 402 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 CLCNKBP51801 687 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 EPHB4P54760 987 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 MYL6P60660 151 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 LRMPQ12912 555 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 RAPGEF1Q13905 1077 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 SHHQ15465 462 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 UPP1Q16831 310 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 EPC2Q52LR7 807 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 C1orf220Q5T0J3 134 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 C15orf39Q6ZRI6 1047 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 TMC6Q7Z403 805 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 APPL2Q8NEU8 664 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 JAKMIP2Q96AA8 810 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 SAMD11Q96NU1 681 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 EDEM3Q9BZQ6 932 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 NIF3L1Q9GZT8 377 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 UBE2TQ9NPD8 197 aaPredicted RBP10.84□□□□□ -0.67
CD44-207ENST00000425428 MIOSQ9NXC5 875 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 IMPACTQ9P2X3 320 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 PUF60Q9UHX1 559 aaKnown RBP10.84□□□□□ -0.67
CD44-207ENST00000425428 LUC7L2Q9Y383 392 aaKnown RBP10.84□□□□□ -0.67
CD44-207ENST00000425428 SNX9Q9Y5X1 595 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 ITIH6Q6UXX5 1313 aa10.84□□□□□ -0.67
CD44-207ENST00000425428 CEP290O15078 2479 aa10.83□□□□□ -0.67
CD44-207ENST00000425428 PDE4DIPQ5VU43 2346 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 ANO9A1A5B4 782 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 PIRO00625 290 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 TEX33O43247 280 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 ASS1P00966 412 aaKnown RBP10.83□□□□□ -0.68
CD44-207ENST00000425428 SLC9A1P19634 815 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 BCAR1P56945 870 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 SMYD5Q6GMV2 418 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 KIAA1841Q6NSI8 718 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 PDXDC1Q6P996 788 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 DPH6Q7L8W6 267 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 CNGA4Q8IV77 575 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 VSTM4Q8IW00 320 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 COLGALT2Q8IYK4 626 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 THEM5Q8N1Q8 247 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 TMEM86AQ8N2M4 240 aa10.83□□□□□ -0.68
CD44-207ENST00000425428 GSTCDQ8NEC7 633 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms