RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ITIH6Q6UXX5 1313 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 MYO1GB0I1T2 1018 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 EEF2KO00418 725 aaKnown RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 KCNN4O15554 427 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 RASSF9O75901 435 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 SSTR3P32745 418 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 GUCY1A2P33402 732 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GRK3P35626 688 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GMPSP49915 693 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 ALFQ53S48 1182 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 STRIP1Q5VSL9 837 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 C16orf87Q6PH81 154 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 TRIM65Q6PJ69 517 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 ANO5Q75V66 913 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 USP13Q92995 863 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 RPRD1AQ96P16 312 aaPredicted RBP7.55□□□□□ -1.2
UPF2-203ENST00000397053 ZCWPW1Q9H0M4 648 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GID8Q9NWU2 228 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 GTF2A1LQ9UNN4 478 aa7.55□□□□□ -1.2
UPF2-203ENST00000397053 HMGB3O15347 200 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 CYP27B1O15528 508 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 HBP1O60381 514 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 CLASP2O75122 1294 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 PGK2P07205 417 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 MBL2P11226 248 aaPredicted RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 BRD2P25440 801 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 RUNX1T1Q06455 604 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 CAMK2GQ13555 558 aaPredicted RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 ZNF284Q2VY69 593 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 USP39Q53GS9 565 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 SLC25A41Q8N5S1 370 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 NT5C1AQ9BXI3 368 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 PRMT7Q9NVM4 692 aaPredicted RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 PLEKHG2Q9H7P9 1386 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 MYOM2P54296 1465 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 H7C1W4 665 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 ANXA11P50995 505 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 NPEPPSP55786 919 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 SCARF1Q14162 830 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 RABGAP1LQ5R372 815 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 KRT35Q92764 455 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 PPP1R2P1Q96PQ5 205 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 MLXIPLQ9NP71 852 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 RGS12O14924 1447 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 H7C4K7 107 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 SCP2P22307 547 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 WEE1P30291 646 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 ORC2Q13416 577 aaPredicted RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 SGSM1Q2NKQ1 1148 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 DCAF6Q58WW2 860 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 NOTUMQ6P988 496 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 PCSK9Q8NBP7 692 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 IPMKQ8NFU5 416 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 ARL8AQ96BM9 186 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 L3MBTL3Q96JM7 780 aaPredicted RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 NFKBIZQ9BYH8 718 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 NMRK1Q9NWW6 199 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 PCDHB12Q9Y5F1 795 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 CUL7Q14999 1698 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 NPC1L1Q9UHC9 1359 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 IGSF1Q8N6C5 1336 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 UBE2Q2LH0YL09 131 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 NMT2O60551 498 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 SLC2A3P11169 496 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 YY1P25490 414 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 ACADSBP45954 432 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 MRPS25P82663 173 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 TBL3Q12788 808 aaKnown RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 LAMC2Q13753 1193 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 NCOA4Q13772 614 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 INPP5AQ14642 412 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 IZUMO3Q5VZ72 239 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 MIB1Q86YT6 1006 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 CINPQ9BW66 212 aaPredicted RBP7.54□□□□□ -1.2
UPF2-203ENST00000397053 STARD7Q9NQZ5 370 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 SYBUQ9NX95 663 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 USE1Q9NZ43 259 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 LNPEPQ9UIQ6 1025 aa7.54□□□□□ -1.2
UPF2-203ENST00000397053 HNRNPRO43390 633 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 ERN1O75460 977 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 TDP2O95551 362 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 FAM200BP0CF97 657 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 PRIM2P49643 509 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ARSEP51690 589 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 GTF2A2P52657 109 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 NLRP11P59045 1033 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 C11orf57Q6ZUT1 292 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 RGL4Q8IZJ4 473 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ATP6V0D2Q8N8Y2 350 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 PANX2Q96RD6 677 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 DEFB129Q9H1M3 183 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 DDX28Q9NUL7 540 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 TRPM5Q9NZQ8 1165 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 CAB39Q9Y376 341 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 PFASO15067 1338 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 ANKARQ7Z5J8 1434 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 UGGT2Q9NYU1 1516 aa7.53□□□□□ -1.2
UPF2-203ENST00000397053 GOLGA4Q13439 2230 aaKnown RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 PSMD12O00232 456 aaPredicted RBP7.53□□□□□ -1.2
UPF2-203ENST00000397053 CCDC22O60826 627 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms