RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 LGR4Q9BXB1 951 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 PHAXQ9H814 394 aaKnown RBP0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 GPR27Q9NS67 375 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZBTB40Q9NUA8 1239 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 PRR34Q9NV39 138 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 TMEM184CQ9NVA4 438 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 WNT16Q9UBV4 365 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 DCTN4Q9UJW0 460 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 PCDHA7Q9UN72 937 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 GAB2Q9UQC2 676 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 ASB1Q9Y576 335 aa0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 TRIP12Q14669 1992 aaPredicted RBP0.15□□□□□ -2.39
RNU6-540P-201ENST00000384622 ATXN2Q99700 1313 aaKnown RBP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 TMEM88BA6NKF7 163 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 BTBD18B2RXH4 712 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 IMPDH2P12268 514 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 MLH1P40692 756 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 MLLT10P55197 1068 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 SOX8P57073 446 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 APBA1Q02410 837 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 EGR4Q05215 589 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 DUSP2Q05923 314 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 FMR1Q06787 632 aaKnown RBP eCLIP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 MEX3CQ5U5Q3 659 aaKnown RBP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 ANKRD13BQ86YJ7 626 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 MAFAQ8NHW3 353 aaPredicted RBP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 SLC30A5Q8TAD4 765 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 ELP5Q8TE02 316 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 LPIN2Q92539 896 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 FUBP3Q96I24 572 aaKnown RBP eCLIP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 DUX3Q96PT4 197 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 UHRF2Q96PU4 802 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 SIGLEC11Q96RL6 698 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 UHRF1Q96T88 793 aaPredicted RBP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 TM6SF1Q9BZW5 370 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 RETREG1Q9H6L5 497 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 KCNQ5Q9NR82 932 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 UBP1Q9NZI7 540 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 KCMF1Q9P0J7 381 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 POU2F3Q9UKI9 436 aa0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 NOC2LQ9Y3T9 749 aaKnown RBP0.14□□□□□ -2.39
RNU6-540P-201ENST00000384622 IGKV6-21A0A0C4DH24 114 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 CCDC78A2IDD5 438 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 FAM47E-STBD1D6RA91 191 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 GOLGA6L22H0YM25 854 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 TLR2O60603 784 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 FSBPO95073 299 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 SYF2O95926 243 aaKnown RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 CFC1BP0CG36 223 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 CFC1P0CG37 223 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 NR2F6P10588 404 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 SP100P23497 879 aaPredicted RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZBTB25P24278 435 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 CDC25CP30307 473 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 HOXA11P31270 313 aaPredicted RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 EIF4A3P38919 411 aaKnown RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 KCNJ4P48050 445 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZRSR1Q15695 479 aaKnown RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 MAN2A1Q16706 1144 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 FIGNQ5HY92 759 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 PLAC9Q5JTB6 97 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 PRAMEF19Q5SWL8 479 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 RSRC2Q7L4I2 434 aaKnown RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 C11orf53Q8IXP5 236 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 FBXL16Q8N461 479 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 TMEM145Q8NBT3 493 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 MPLKIPQ8TAP9 179 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 MYCBPAPQ8TBZ2 947 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZNF296Q8WUU4 475 aaPredicted RBP0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 TBC1D5Q92609 795 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 SLC25A28Q96A46 364 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 CYYR1Q96J86 154 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 EPYCQ99645 322 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 ANO3Q9BYT9 981 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 WFDC1Q9HC57 220 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 MLXIPLQ9NP71 852 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 USP25Q9UHP3 1055 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZNRF3Q9ULT6 936 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 SYNPO2Q9UMS6 1093 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 SLC12A7Q9Y666 1083 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 USP31Q70CQ4 1352 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 SSPOA2VEC9 5147 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 TENM1Q9UKZ4 2725 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 OTOGLQ3ZCN5 2332 aa0.13□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZMYM3Q14202 1370 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 WDR27A2RRH5 827 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 C17orf51A8MQB3 221 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 VWC2LB2RUY7 222 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 ZNF213O14771 459 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 SOD2P04179 222 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 DUX4L4P0CJ87 422 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 NDUFB7P17568 137 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 ALDH6A1Q02252 535 aaKnown RBP0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 ID2Q02363 134 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 COASYQ13057 564 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 GPR19Q15760 415 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 PRTGQ2VWP7 1150 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 MANEAQ5SRI9 462 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 FBXW10Q5XX13 1052 aa0.12□□□□□ -2.39
RNU6-540P-201ENST00000384622 WBP2NLQ6ICG8 309 aa0.12□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms