RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ITGB1P05556 798 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 SLC6A4P31645 630 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 SCNN1GP51170 649 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 CHN2P52757 468 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 RRP1BQ14684 758 aaKnown RBP4.21□□□□□ -1.74
HMGB1-201ENST00000326004 POLD3Q15054 466 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-201ENST00000326004 KHDC1LQ5JSQ8 128 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF585AQ6P3V2 769 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 KSR2Q6VAB6 950 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 MED25Q71SY5 747 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 PPP1R3BQ86XI6 285 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 PJA1Q8NG27 643 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 NUP133Q8WUM0 1156 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 LRTOMTQ8WZ04 291 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 DDX17Q92841 729 aaKnown RBP4.21□□□□□ -1.74
HMGB1-201ENST00000326004 TNPO1Q92973 898 aaKnown RBP4.21□□□□□ -1.74
HMGB1-201ENST00000326004 DVL3Q92997 716 aaPredicted RBP4.21□□□□□ -1.74
HMGB1-201ENST00000326004 C8orf49Q96NF6 230 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 C1orf43Q9BWL3 253 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 SIK2Q9H0K1 926 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 ZMAT3Q9HA38 289 aaKnown RBP4.21□□□□□ -1.74
HMGB1-201ENST00000326004 GPR35Q9HC97 309 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 ABCC9O60706 1549 aa4.21□□□□□ -1.74
HMGB1-201ENST00000326004 ANO9A1A5B4 782 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 CFAP69A5D8W1 941 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 CDHR4A6H8M9 788 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 AGFG2O95081 481 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 CHEK2O96017 543 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 GNAI2P04899 355 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 GJB1P08034 283 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 NBPF7P0C2Y1 421 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SPATA31D3P0C874 917 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 RARBP10826 455 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 CKBP12277 381 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 RPL17P18621 184 aaKnown RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 GCSHP23434 173 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 PEX2P28328 305 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 MAGEA10P43363 369 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SOX8P57073 446 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 NHLH2Q02577 135 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SEMA5AQ13591 1074 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 R3HDM1Q15032 1099 aaKnown RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SPATS1Q496A3 300 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 COBLL1Q53SF7 1204 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 FAM102AQ5T9C2 384 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 UTP14CQ5TAP6 766 aaKnown RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 AGAP9Q5VTM2 703 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SWSAP1Q6NVH7 229 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 APOA5Q6Q788 366 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SPATA31D4Q6ZUB0 917 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 TMPRSS6Q8IU80 811 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SYT12Q8IV01 421 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 RHOT2Q8IXI1 618 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 TBC1D15Q8TC07 691 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 ANKS1AQ92625 1134 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SCAMP4Q969E2 229 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 PGBD4Q96DM1 585 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 SUCLG2Q96I99 432 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 C1QTNF3Q9BXJ4 246 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 KRTAP9-9Q9BYP9 154 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 KRTAP9-4Q9BYQ2 154 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 C22orf23Q9BZE7 217 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 LRRC27Q9C0I9 530 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 BHMT2Q9H2M3 363 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 RSAD1Q9HA92 442 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 ATP6V0A4Q9HBG4 840 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 ST6GALNAC1Q9NSC7 600 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 STAP2Q9UGK3 403 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 EIF2B4Q9UI10 523 aaKnown RBP4.2□□□□□ -1.74
HMGB1-201ENST00000326004 TPCN1Q9ULQ1 816 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 PCDHA6Q9UN73 950 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 ATP11BQ9Y2G3 1177 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 MED16Q9Y2X0 877 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 PAXBP1Q9Y5B6 917 aa4.2□□□□□ -1.74
HMGB1-201ENST00000326004 GRXCR1A8MXD5 290 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 ISM1B1AKI9 464 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 LEFTY2O00292 366 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 AHSGP02765 367 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 THP07101 528 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 NPR1P16066 1061 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 SLC6A2P23975 617 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 APOBEC3AP31941 199 aaPredicted RBP4.19□□□□□ -1.74
HMGB1-201ENST00000326004 KCNJ5P48544 419 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 NOMO3P69849 1222 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 EFEMP1Q12805 493 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 HABP2Q14520 560 aaPredicted RBP4.19□□□□□ -1.74
HMGB1-201ENST00000326004 MAP9Q49MG5 647 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 METRNLQ641Q3 311 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 ZFPM1Q8IX07 1006 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 KRT78Q8N1N4 520 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 IL31RAQ8NI17 732 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 KBTBD7Q8WVZ9 684 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 APIPQ96GX9 242 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 PHACTR3Q96KR7 559 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 MRGPRX1Q96LB2 322 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 NT5C1BQ96P26 610 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 PNKPQ96T60 521 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 TRIM54Q9BYV2 358 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 BTBD1Q9H0C5 482 aa4.19□□□□□ -1.74
HMGB1-201ENST00000326004 ZNF700Q9H0M5 742 aa4.19□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms