RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 ZNF846Q147U1 533 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 EXOC3L1Q86VI1 746 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 ZBED8Q8IZ13 594 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DIS3LQ8TF46 1054 aaKnown RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 CYGBQ8WWM9 190 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DNAJC11Q9NVH1 559 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 GABBR1Q9UBS5 961 aa12.32□□□□□ -0.44
SNIP1-201ENST00000296215 MINK1Q8N4C8 1332 aaPredicted RBP12.32□□□□□ -0.44
SNIP1-201ENST00000296215 DDX3XO00571 662 aaKnown RBP eCLIP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 ASS1P00966 412 aaKnown RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 MZF1P28698 734 aaPredicted RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PRPF39Q86UA1 669 aaKnown RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 KRT35Q92764 455 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 ATP13A3Q9H7F0 1226 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 TRIM45Q9H8W5 580 aaPredicted RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PRKAG3Q9UGI9 489 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 VANGL2Q9ULK5 521 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 CASKIN1Q8WXD9 1431 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 FUOMA2VDF0 154 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SPAG6O75602 509 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SERPING1P05155 500 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 FOSL2P15408 326 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 IFI35P80217 286 aaPredicted RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 KLHL12Q53G59 568 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 ALFQ53S48 1182 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 RUNDC3AQ59EK9 446 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 C10orf76Q5T2E6 689 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 C4orf50Q6ZRC1 276 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 STXBP4Q6ZWJ1 553 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 CYP2U1Q7Z449 544 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 NEDD1Q8NHV4 660 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PYDC1Q8WXC3 89 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 MED30Q96HR3 178 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 RUBCNLQ9H714 662 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 GDF3Q9NR23 364 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 COPG2Q9UBF2 871 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 STOML2Q9UJZ1 356 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 MRPS7Q9Y2R9 242 aaKnown RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 STON1Q9Y6Q2 735 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SLC4A4Q9Y6R1 1079 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PDE2AO00408 941 aaPredicted RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PHF2O75151 1096 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SLC12A2P55011 1212 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 DGLUCYQ7Z3D6 616 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 BPHLQ86WA6 291 aaPredicted RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 FAM20CQ8IXL6 584 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 FNIP1Q8TF40 1166 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PLEKHA8Q96JA3 519 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 ZKSCAN3Q9BRR0 538 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 CARD14Q9BXL6 1004 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 PMF1-BGLAPU3KQ54 211 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 NPPAP01160 153 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 TFPTP0C1Z6 253 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 OVGP1Q12889 678 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 MTERF2Q49AM1 385 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 RESP18Q5W5W9 173 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SLC9A4Q6AI14 798 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 DHDDSQ86SQ9 333 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SNF8Q96H20 258 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SERPINB12Q96P63 405 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 C20orf96Q9NUD7 363 aaPredicted RBP12.31□□□□□ -0.44
SNIP1-201ENST00000296215 TOR4AQ9NXH8 423 aa12.31□□□□□ -0.44
SNIP1-201ENST00000296215 SULT1B1O43704 296 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 NADKO95544 446 aaPredicted RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 RPA1P27694 616 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 GPSM2P81274 684 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 SPARTQ8N0X7 666 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 FITM2Q8N6M3 262 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 ASZ1Q8WWH4 475 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 POMGNT1Q8WZA1 660 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 PGM2Q96G03 612 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 SERHL2Q9H4I8 314 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 FAM8A1Q9UBU6 413 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 DUSP10Q9Y6W6 482 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 DAPK1P53355 1430 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 FAM83GA6ND36 823 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 TLR2O60603 784 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 PABPC4LP0CB38 370 aaKnown RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 NR4A1P22736 598 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 PDIA3P30101 505 aaKnown RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 ENTPD1P49961 510 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 DHX34Q14147 1143 aaKnown RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 FAM122CQ6P4D5 195 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 HACE1Q8IYU2 909 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 POU5F2Q8N7G0 328 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 SYTL5Q8TDW5 730 aaPredicted RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 KBTBD7Q8WVZ9 684 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 LACRTQ9GZZ8 138 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 FBXO28Q9NVF7 368 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 KMOO15229 486 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 AFPP02771 609 aaKnown RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 PIK3CAP42336 1068 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 GPD2P43304 727 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 MFAP3P55082 362 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 BNC1Q01954 994 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 TBX2Q13207 712 aaPredicted RBP12.3□□□□□ -0.44
SNIP1-201ENST00000296215 PLS1Q14651 629 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 TTI2Q6NXR4 508 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 PHC2Q8IXK0 858 aa12.3□□□□□ -0.44
SNIP1-201ENST00000296215 MICU2Q8IYU8 434 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms