RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SLC11A1P49279 550 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 VAMP7P51809 220 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 BCAR1P56945 870 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 DLG4P78352 724 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 TAP1Q03518 808 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 C1orf220Q5T0J3 134 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 LRSAM1Q6UWE0 723 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 FRMD5Q7Z6J6 570 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 COLGALT1Q8NBJ5 622 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 CCDC127Q96BQ5 260 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 FNBP1Q96RU3 617 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 GOLGA2P5Q9HBQ8 144 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 INTS13Q9NVM9 706 aa21.34■■□□□ 1.01
UPF3A-211ENST00000618700 NLRC5Q86WI3 1866 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 GALTP07902 379 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 DLATP10515 647 aaKnown RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 KRT13P13646 458 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 LRPAP1P30533 357 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 ZNF165P49910 485 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 GUCY2FP51841 1108 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 NCAPHQ15003 741 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 TPD52L1Q16890 204 aaPredicted RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 LMBRD2Q68DH5 695 aaPredicted RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 SPRED2Q7Z698 418 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 TMEM130Q8N3G9 435 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 AOPEPQ8N6M6 819 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 BEST2Q8NFU1 509 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 OR5B17Q8NGF7 314 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 TIFAQ96CG3 184 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 FAM84AQ96KN4 292 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 UROC1Q96N76 676 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 FAM193BQ96PV7 902 aaPredicted RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 POP1Q99575 1024 aaKnown RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 MTMR12Q9C0I1 747 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 METTL14Q9HCE5 456 aaKnown RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 CACNG4Q9UBN1 327 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 ARMCX3Q9UH62 379 aaPredicted RBP21.33■■□□□ 1.01
UPF3A-211ENST00000618700 RWDD3Q9Y3V2 267 aa21.33■■□□□ 1.01
UPF3A-211ENST00000618700 CARNS1A5YM72 827 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 CASTOR2A6NHX0 329 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 IKBKBO14920 756 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 CAVIN2O95810 425 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 ERVK-21P61565 698 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 TFAMQ00059 246 aaKnown RBP21.32■■□□□ 1
UPF3A-211ENST00000618700 CCDC40Q4G0X9 1142 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 SPOUT1Q5T280 376 aaKnown RBP21.32■■□□□ 1
UPF3A-211ENST00000618700 PPP2R2DQ66LE6 453 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 KCNT2Q6UVM3 1135 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 USP37Q86T82 979 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 TRIM59Q8IWR1 403 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 DHX40Q8IX18 779 aaKnown RBP21.32■■□□□ 1
UPF3A-211ENST00000618700 C1orf127Q8N9H9 656 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 CXorf38Q8TB03 319 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 ZNF516Q92618 1163 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 CNOT6LQ96LI5 555 aaKnown RBP21.32■■□□□ 1
UPF3A-211ENST00000618700 ZNF558Q96NG5 402 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 TGS1Q96RS0 853 aaKnown RBP21.32■■□□□ 1
UPF3A-211ENST00000618700 PAAF1Q9BRP4 392 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 C17orf80Q9BSJ5 609 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 SAMSN1Q9NSI8 373 aaKnown RBP21.32■■□□□ 1
UPF3A-211ENST00000618700 METRNQ9UJH8 293 aa21.32■■□□□ 1
UPF3A-211ENST00000618700 TMEM191BP0C7N4 346 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 TRIM49P0CI25 452 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 TRIM49CP0CI26 452 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 C7P10643 843 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 TNNI1P19237 187 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 BMPR1AP36894 532 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 PBX3P40426 434 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 OR1G1P47890 313 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 IQCB1Q15051 598 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 UPP1Q16831 310 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 DUOXA2Q1HG44 320 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 CDKAL1Q5VV42 579 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 GPR153Q6NV75 609 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 CACTINQ8WUQ7 758 aaKnown RBP21.31■■□□□ 1
UPF3A-211ENST00000618700 SLC35C1Q96A29 364 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 DDX27Q96GQ7 796 aaKnown RBP21.31■■□□□ 1
UPF3A-211ENST00000618700 ANKRD36BP1Q96IX9 119 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 SAMD11Q96NU1 681 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 SLC28A3Q9HAS3 691 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 AAASQ9NRG9 546 aa21.31■■□□□ 1
UPF3A-211ENST00000618700 ANO9A1A5B4 782 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 C5orf67F2Z3F1 127 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 TMEM189-UBE2V1I3L0A0 370 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 PODXLO00592 558 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 NRP1O14786 923 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 RPL9P32969 192 aaKnown RBP21.3■■□□□ 1
UPF3A-211ENST00000618700 CTNNB1P35222 781 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 ALDH7A1P49419 539 aaKnown RBP21.3■■□□□ 1
UPF3A-211ENST00000618700 CLCNKBP51801 687 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 AP3M2P53677 418 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 PPP3CAQ08209 521 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 TMEM173Q86WV6 379 aaPredicted RBP21.3■■□□□ 1
UPF3A-211ENST00000618700 FAM114A1Q8IWE2 563 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 SLC39A11Q8N1S5 342 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 BCL7CQ8WUZ0 217 aaPredicted RBP21.3■■□□□ 1
UPF3A-211ENST00000618700 HSD3B7Q9H2F3 369 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 TSPY26PQ9H489 355 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 CBX8Q9HC52 389 aa21.3■■□□□ 1
UPF3A-211ENST00000618700 MARCH5Q9NX47 278 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms