RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 PCDHA3Q9Y5H8 950 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 SIPA1L3O60292 1781 aaPredicted RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 TJP1Q07157 1748 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 STAM2O75886 525 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 PAEPP09466 180 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 POLGP54098 1239 aaPredicted RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 DRG2P55039 364 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 SMAD1Q15797 465 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 RHPN2Q8IUC4 686 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 FITM2Q8N6M3 262 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 CCDC110Q8TBZ0 833 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 FBXO41Q8TF61 875 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ATXN2LQ8WWM7 1075 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 FAM163AQ96GL9 167 aaPredicted RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 TRIM4Q9C037 500 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 METTL5Q9NRN9 209 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 NXF1Q9UBU9 619 aaKnown RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 H7C0C1 242 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 RAD17O75943 681 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ZSCAN5DPP0CG00 497 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 SNHG28P0DPA3 235 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 GZMAP12544 262 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 KRT4P19013 534 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 EPHB2P29323 1055 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ATP5OP48047 213 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ARFIP2P53365 341 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 PDIK1LQ8N165 341 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 AGGF1Q8N302 714 aaeCLIP13.35□□□□□ -0.27
LIG1-221ENST00000613670 SPOCK2Q92563 424 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 FAM81BQ96LP2 452 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 RMDN2Q96LZ7 410 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 MAGEB18Q96M61 343 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 ZNF317Q96PQ6 595 aaPredicted RBP13.35□□□□□ -0.27
LIG1-221ENST00000613670 TTC1Q99614 292 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 MYLK2Q9H1R3 596 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 KCNH7Q9NS40 1196 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 NUP188Q5SRE5 1749 aa13.35□□□□□ -0.27
LIG1-221ENST00000613670 CCDC195A0A1B0GUA6 201 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 CLK2P49760 499 aaKnown RBP13.34□□□□□ -0.27
LIG1-221ENST00000613670 OSTNP61366 133 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 CKAP2Q8WWK9 683 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 AGBL1Q96MI9 1066 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 WDR18Q9BV38 432 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 DLGAP2Q9P1A6 1054 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 ZHX2Q9Y6X8 837 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 SLC26A4O43511 780 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 OPHN1O60890 802 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 KIF22Q14807 665 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 CFAP157Q5JU67 520 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 TMEM154Q6P9G4 183 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 ZBTB33Q86T24 672 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 CFAP36Q96G28 342 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 FAM161BQ96MY7 647 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 DNAJC9Q8WXX5 260 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 ART4Q93070 314 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 SPATA31A5Q5VU36 1347 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 SPATA31A7Q8IWB4 1347 aa13.34□□□□□ -0.27
LIG1-221ENST00000613670 PTGIRP43119 386 aa13.33□□□□□ -0.27
LIG1-221ENST00000613670 CTCFP49711 727 aaPredicted RBP13.33□□□□□ -0.27
LIG1-221ENST00000613670 NR1H3Q13133 447 aa13.33□□□□□ -0.27
LIG1-221ENST00000613670 PKN2Q16513 984 aaKnown RBP13.33□□□□□ -0.27
LIG1-221ENST00000613670 EAPPQ56P03 285 aaPredicted RBP13.33□□□□□ -0.27
LIG1-221ENST00000613670 SPOPLQ6IQ16 392 aa13.33□□□□□ -0.27
LIG1-221ENST00000613670 MTDHQ86UE4 582 aaKnown RBP13.33□□□□□ -0.27
LIG1-221ENST00000613670 SP8Q8IXZ3 490 aa13.33□□□□□ -0.27
LIG1-221ENST00000613670 MARCOQ9UEW3 520 aaPredicted RBP13.33□□□□□ -0.27
LIG1-221ENST00000613670 SNED1Q8TER0 1413 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 GAKO14976 1311 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 CYP3A7-CYP3A51PA0A087WV96 503 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 DESP17661 470 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 CYP3A7P24462 503 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 GABPAQ06546 454 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 HIF1AQ16665 826 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 TAF1BQ53T94 588 aaPredicted RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 PCNX4Q63HM2 1172 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 NLRP9Q7RTR0 991 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 PIGWQ7Z7B1 504 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 CCDC125Q86Z20 511 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 ZSWIM2Q8NEG5 633 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 RMDN3Q96TC7 470 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 HSD17B14Q9BPX1 270 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 GABBR1Q9UBS5 961 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 LAMB4A4D0S4 1761 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 O00370 1275 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 TFAMQ00059 246 aaKnown RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 HADHQ16836 314 aaKnown RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 SMTNL2Q2TAL5 461 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 APOBEC3HQ6NTF7 200 aaKnown RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 SV2AQ7L0J3 742 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 BZW1Q7L1Q6 419 aaKnown RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 ZNF341Q9BYN7 854 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 SLC13A1Q9BZW2 595 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 CICQ96RK0 1608 aaPredicted RBP13.33□□□□□ -0.28
LIG1-221ENST00000613670 AFF2P51816 1311 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 H0YIN7 160 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 MAP3K7O43318 606 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 ARL4CP56559 192 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 SLC8A3P57103 927 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 KLC1Q07866 573 aa13.33□□□□□ -0.28
LIG1-221ENST00000613670 SPDYCQ5MJ68 293 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms