RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 HIPK3Q9H422 1215 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 WDR35Q9P2L0 1181 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 TLDC2A0PJX2 215 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CYB561D2O14569 222 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 FTLP02792 175 aaPredicted RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 CRYBB1P53674 252 aaPredicted RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 SLC12A3P55017 1021 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 WHAMMP3Q1A5X7 153 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 PPP6R3Q5H9R7 873 aaPredicted RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 ZNF280DQ6N043 979 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 ADAT2Q7Z6V5 191 aaKnown RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 ZNF507Q8TCN5 953 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 AGPAT1Q99943 283 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 FAM49BQ9NUQ9 324 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIG3-216ENST00000593099 DPP7Q9UHL4 492 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 LSM7Q9UK45 103 aaKnown RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 PCDHB2Q9Y5E7 798 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 V9GYY5 206 aaPredicted RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 KCNA2P16389 499 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 GLRA2P23416 452 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 VEGFBP49765 207 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 SLMAPQ14BN4 828 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 SIAH1Q8IUQ4 282 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 GSDMBQ8TAX9 411 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 ASAP3Q8TDY4 903 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CALR3Q96L12 384 aaKnown RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 SLITRK1Q96PX8 696 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 DDX50Q9BQ39 737 aaKnown RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 SMIM35A0A1B0GVV1 85 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 MAN1A1P33908 653 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 ADCY8P40145 1251 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 RECQLP46063 649 aaPredicted RBP10.45□□□□□ -0.74
LIG3-216ENST00000593099 VPS41P49754 854 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CYP24A1Q07973 514 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CCL14Q16627 93 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CTXN3Q4LDR2 81 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 CENPPQ6IPU0 288 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 STKLD1Q8NE28 680 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 PI4K2AQ9BTU6 479 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 ZWILCHQ9H900 591 aa10.45□□□□□ -0.74
LIG3-216ENST00000593099 THSD7AQ9UPZ6 1657 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 FAM200BP0CF97 657 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 SLC9A1P19634 815 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 AKAP5P24588 427 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 TAP1Q03518 808 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 NUDT18Q6ZVK8 323 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 TRAPPC11Q7Z392 1133 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 MAP4K3Q8IVH8 894 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 CCDC63Q8NA47 563 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 MED15Q96RN5 788 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 TRPC7Q9HCX4 862 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 ABI2Q9NYB9 513 aaPredicted RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 MSRAQ9UJ68 235 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 A0A1B0GTH6 734 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 CASTOR2A6NHX0 329 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 PARNO95453 639 aaKnown RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 CCNE2O96020 404 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 ACADSBP45954 432 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 TFDP2Q14188 446 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 UAP1Q16222 522 aaPredicted RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 NT5DC4Q86YG4 428 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 CAPN11Q9UMQ6 739 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 MOCS2O96007 188 aaPredicted RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 HSPA6P17066 643 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 ATICP31939 592 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 NNMTP40261 264 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 CASP4P49662 377 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 RGS7P49802 495 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 DYNLT1P63172 113 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 NFE2Q16621 373 aaPredicted RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 FBXO47Q5MNV8 452 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 SLC35F6Q8N357 371 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 HSPH1Q92598 858 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 DHX38Q92620 1227 aaKnown RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 MAGOHBQ96A72 148 aaKnown RBP10.44□□□□□ -0.74
LIG3-216ENST00000593099 RUNDC3BQ96NL0 473 aa10.44□□□□□ -0.74
LIG3-216ENST00000593099 IGF2BP3O00425 579 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIG3-216ENST00000593099 OPA1O60313 960 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 IVLP07476 585 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 NFKBIAP25963 317 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 RWDD2BP57060 319 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 CUL2Q13617 745 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 GRB14Q14449 540 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 EFHC2Q5JST6 749 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 OLFML2BQ68BL8 750 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ZNF784Q8NCA9 323 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 UBLCP1Q8WVY7 318 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 TNFRSF25Q93038 417 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 IP6K2Q9UHH9 426 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 KIAA1257Q9ULG3 409 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 NRAPQ86VF7 1730 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 EFCAB14O75071 495 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 MOCS3O95396 460 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 FTCDO95954 541 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 COL2A1P02458 1487 aaPredicted RBP10.43□□□□□ -0.74
LIG3-216ENST00000593099 IQCB1Q15051 598 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 BRSK2Q8IWQ3 736 aa10.43□□□□□ -0.74
LIG3-216ENST00000593099 ABCA3Q99758 1704 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms