RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 EXTL3O43909 919 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 LILRB3O75022 631 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 KIF20AO95235 890 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 LTBRP36941 435 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 NDUFV1P49821 464 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 CREMQ03060 361 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 TFF2Q03403 129 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 SPAG1Q07617 926 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 TMEM132DQ14C87 1099 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 LEXMQ3ZCV2 418 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 KIAA0319Q5VV43 1072 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 JADE1Q6IE81 842 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 TMEM184AQ6ZMB5 413 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 EP400NLQ6ZTU2 488 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 TAS1R1Q7RTX1 841 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 NT5DC4Q86YG4 428 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 BRSK2Q8IWQ3 736 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 NELFCDQ8IXH7 590 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 GPD1LQ8N335 351 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 AUTS2Q8WXX7 1259 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 SAAL1Q96ER3 474 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 ASB2Q96Q27 587 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 TTPALQ9BTX7 342 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 KIAA1586Q9HCI6 787 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.92□□□□□ -0.34
LIG3-213ENST00000590630 AGPAT3Q9NRZ7 376 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 RBAKQ9NYW8 714 aaPredicted RBP12.92□□□□□ -0.34
LIG3-213ENST00000590630 TUBGCP4Q9UGJ1 667 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 BDP1A6H8Y1 2624 aa12.92□□□□□ -0.34
LIG3-213ENST00000590630 SCN1AP35498 2009 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 PLXNA3P51805 1871 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 TCF20Q9UGU0 1960 aaKnown RBP12.91□□□□□ -0.34
LIG3-213ENST00000590630 C2CD2LO14523 706 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 LINC01565O15544 149 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 TGFB1I1O43294 461 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 KINO60870 393 aaKnown RBP12.91□□□□□ -0.34
LIG3-213ENST00000590630 CLASP2O75122 1294 aaKnown RBP12.91□□□□□ -0.34
LIG3-213ENST00000590630 TBX10O75333 385 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 GLP2RO95838 553 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 ADH1AP07327 375 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 NFICP08651 508 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 LRPAP1P30533 357 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 UBE2HP62256 183 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 KCNC3Q14003 757 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 FAM171A1Q5VUB5 890 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 SPATA1Q5VX52 437 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 PDXDC1Q6P996 788 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.91□□□□□ -0.34
LIG3-213ENST00000590630 CLEC17AQ6ZS10 378 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 PPFIBP1Q86W92 1011 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 C12orf56Q8IXR9 622 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 ELOA2Q8IYF1 753 aaPredicted RBP12.91□□□□□ -0.34
LIG3-213ENST00000590630 C3orf58Q8NDZ4 430 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 BEST2Q8NFU1 509 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 GSDMAQ96QA5 445 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 PCIF1Q9H4Z3 704 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 RXFP1Q9HBX9 757 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 TSHZ2Q9NRE2 1034 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 RMND1Q9NWS8 449 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 HSPBP1Q9NZL4 362 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 NUB1Q9Y5A7 615 aa12.91□□□□□ -0.34
LIG3-213ENST00000590630 GOLGA8IPA6NC78 632 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 ZNF233A6NK53 670 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 GOLGA8JA6NMD2 632 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 H3BQ06 376 aaPredicted RBP12.9□□□□□ -0.34
LIG3-213ENST00000590630 GADD45BO75293 160 aaPredicted RBP12.9□□□□□ -0.34
LIG3-213ENST00000590630 SMC2O95347 1197 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 CNPP09543 421 aaKnown RBP12.9□□□□□ -0.34
LIG3-213ENST00000590630 FGFR3P22607 806 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 DLX2Q07687 328 aaPredicted RBP12.9□□□□□ -0.34
LIG3-213ENST00000590630 PNOCQ13519 176 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 PUS10Q3MIT2 529 aaKnown RBP12.9□□□□□ -0.34
LIG3-213ENST00000590630 TJAP1Q5JTD0 557 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 CD300LGQ6UXG3 332 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 ZSWIM2Q8NEG5 633 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 VN1R2Q8NFZ6 395 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 SPATA20Q8TB22 786 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 TMEM174Q8WUU8 243 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 RIN2Q8WYP3 895 aaPredicted RBP12.9□□□□□ -0.34
LIG3-213ENST00000590630 PIK3R5Q8WYR1 880 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 CASP10Q92851 521 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 B3GALT6Q96L58 329 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 FBXL18Q96ME1 805 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 CLEC1BQ9P126 229 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 FNIP2Q9P278 1114 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 HCFC2Q9Y5Z7 792 aa12.9□□□□□ -0.34
LIG3-213ENST00000590630 PDXKO00764 312 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 SYN3O14994 580 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 TEX28O15482 410 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 C1RP00736 705 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 HOXB8P17481 243 aaPredicted RBP12.89□□□□□ -0.35
LIG3-213ENST00000590630 PAX3P23760 479 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 KLRC2P26717 231 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 KCNQ1P51787 676 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 SURF1Q15526 300 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 SNRNP35Q16560 246 aaKnown RBP12.89□□□□□ -0.35
LIG3-213ENST00000590630 RTP2Q5QGT7 225 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 CEP57Q86XR8 500 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 EFCAB13Q8IY85 973 aa12.89□□□□□ -0.35
LIG3-213ENST00000590630 XXYLT1Q8NBI6 393 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms