RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 KCNK18Q7Z418 384 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 TCEAL8Q8IYN2 117 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 SUMF1Q8NBK3 374 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 KXD1Q9BQD3 176 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 RUSC1Q9BVN2 902 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 PLA2G2FQ9BZM2 168 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 C17orf75Q9HAS0 396 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 GDE1Q9NZC3 331 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 MTF2Q9Y483 593 aaPredicted RBP12.88□□□□□ -0.35
CLIP3-204ENST00000590559 ANK1P16157 1881 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 TICRRQ7Z2Z1 1910 aa12.88□□□□□ -0.35
CLIP3-204ENST00000590559 PP2D1A8MPX8 630 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 LAD1O00515 517 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 PODXLO00592 558 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 NRG2O14511 850 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 SYN3O14994 580 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 HIP1RO75146 1068 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 MICAL2O94851 1124 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 RHOP08100 348 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 MCF2P10911 925 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 ATF2P15336 505 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 FCARP24071 287 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 ID4P47928 161 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 VARS2Q5ST30 1063 aaKnown RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 HYIQ5T013 277 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 APBB1IPQ7Z5R6 666 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 ZNF687Q8N1G0 1237 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 SNX29Q8TEQ0 813 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 NELL1Q92832 810 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 KCNN1Q92952 543 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 CLDN23Q96B33 292 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 ZSCAN31Q96LW9 406 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 CCDC94Q9BW85 323 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 TARS2Q9BW92 718 aaKnown RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 MRPL4Q9BYD3 311 aaKnown RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 SH2B1Q9NRF2 756 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 TOPORSQ9NS56 1045 aaPredicted RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 SLC38A7Q9NVC3 462 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 NOL7Q9UMY1 257 aaKnown RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 POLIQ9UNA4 740 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 DNM3Q9UQ16 869 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 RBM19Q9Y4C8 960 aaKnown RBP12.87□□□□□ -0.35
CLIP3-204ENST00000590559 CEP250Q9BV73 2442 aa12.87□□□□□ -0.35
CLIP3-204ENST00000590559 CCDC169A6NNP5 214 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 SEC24AO95486 1093 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 CEBPBP17676 345 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 PTPN2P17706 415 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 RFX1P22670 979 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 GUCY2CP25092 1073 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 CDC25AP30304 524 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 RPL9P32969 192 aaKnown RBP12.86□□□□□ -0.35
CLIP3-204ENST00000590559 YARSP54577 528 aaKnown RBP12.86□□□□□ -0.35
CLIP3-204ENST00000590559 PFKPQ01813 784 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 SLC10A6Q3KNW5 377 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 ZNF568Q3ZCX4 644 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 MPZL3Q6UWV2 235 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 SPIRE2Q8WWL2 714 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 C18orf25Q96B23 403 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-204ENST00000590559 BORCS6Q96GS4 357 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 ZBTB45Q96K62 511 aaPredicted RBP12.86□□□□□ -0.35
CLIP3-204ENST00000590559 SUSD3Q96L08 255 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 DRC1Q96MC2 740 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 ACAP3Q96P50 834 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 LTB4R2Q9NPC1 389 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 KMT5AQ9NQR1 393 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 FBXO4Q9UKT5 387 aa12.86□□□□□ -0.35
CLIP3-204ENST00000590559 MRPS23Q9Y3D9 190 aaKnown RBP12.86□□□□□ -0.35
CLIP3-204ENST00000590559 TSC2P49815 1807 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 LAMA1P25391 3075 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 GPR179Q6PRD1 2367 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 MOSPD3O75425 235 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 CCR2P41597 374 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 MAGEA9P43362 315 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 RPS9P46781 194 aaKnown RBP12.85□□□□□ -0.35
CLIP3-204ENST00000590559 OSTNP61366 133 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 DMP1Q13316 513 aaPredicted RBP12.85□□□□□ -0.35
CLIP3-204ENST00000590559 TPGS2Q68CL5 300 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 TANGO2Q6ICL3 276 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 ZC3H14Q6PJT7 736 aaKnown RBP12.85□□□□□ -0.35
CLIP3-204ENST00000590559 KCTD17Q8N5Z5 321 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 TMEM161BQ8NDZ6 487 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 BEST2Q8NFU1 509 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 ING5Q8WYH8 240 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 ELSPBP1Q96BH3 223 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 MCRS1Q96EZ8 462 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 TIPINQ9BVW5 301 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 RAB34Q9BZG1 259 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 HAPLN2Q9GZV7 340 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 FBXL5Q9UKA1 691 aa12.85□□□□□ -0.35
CLIP3-204ENST00000590559 FAM170BA6NMN3 283 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 SFI1A8K8P3 1242 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 SLC16A4O15374 487 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 TOM1L1O75674 476 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 VNN2O95498 520 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 NEFLP07196 543 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 MAPTP10636 758 aaKnown RBP12.84□□□□□ -0.35
CLIP3-204ENST00000590559 CD72P21854 359 aa12.84□□□□□ -0.35
CLIP3-204ENST00000590559 TARSP26639 723 aaKnown RBP12.84□□□□□ -0.35
CLIP3-204ENST00000590559 EPHA5P54756 1037 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms