RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 NFE2L3Q9Y4A8 694 aa11.59□□□□□ -0.55
SMARCA4-213ENST00000587988 FGFR1OPO95684 399 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 C4BPAP04003 597 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 ITGB1P05556 798 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 KRT13P13646 458 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 LAG3P18627 525 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 CYP3A5P20815 502 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 LRPAP1P30533 357 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 BMPR1AP36894 532 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 OR1G1P47890 313 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 MARSP56192 900 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 ZNF445P59923 1031 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 ERVK-21P61565 698 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 MYL5Q02045 173 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 PPP3CAQ08209 521 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 HSP90AA2PQ14568 343 aaPredicted RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 IQCB1Q15051 598 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 UPP1Q16831 310 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 PPP2R2DQ66LE6 453 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 CD300LGQ6UXG3 332 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 NT5DC4Q86YG4 428 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 C1orf127Q8N9H9 656 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 C3orf58Q8NDZ4 430 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 BEST2Q8NFU1 509 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 CXorf38Q8TB03 319 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 CACTINQ8WUQ7 758 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 BCL7CQ8WUZ0 217 aaPredicted RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 ANKRD36BP1Q96IX9 119 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 CNOT6LQ96LI5 555 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 ZNF558Q96NG5 402 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 TGS1Q96RS0 853 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 TMEM175Q9BSA9 504 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 NAT10Q9H0A0 1025 aaKnown RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 TSPY26PQ9H489 355 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 MMRN2Q9H8L6 949 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 SLC28A3Q9HAS3 691 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 CBX8Q9HC52 389 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 FANCLQ9NW38 375 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 MARCH5Q9NX47 278 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 ARMCX3Q9UH62 379 aaPredicted RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 SIX4Q9UIU6 781 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 FAN1Q9Y2M0 1017 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 PRG3Q9Y2Y8 225 aaPredicted RBP11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 LAMA3Q16787 3333 aa11.58□□□□□ -0.56
SMARCA4-213ENST00000587988 TRIOBPQ9H2D6 2365 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 ANO9A1A5B4 782 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 EPOPA6NHQ4 379 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 PODXLO00592 558 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 XPOTO43592 962 aaKnown RBP11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 GNA14O95837 355 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 CST3P01034 146 aaPredicted RBP11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 ITGB3P05106 788 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 TMEM191BP0C7N4 346 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 CTNNB1P35222 781 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 GCLMP48507 274 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 ALDH7A1P49419 539 aaKnown RBP11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 DUOXA2Q1HG44 320 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 EPC2Q52LR7 807 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 DCAF17Q5H9S7 520 aaPredicted RBP11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 HABP4Q5JVS0 413 aaKnown RBP11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 TCERG1LQ5VWI1 586 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 C9orf57Q5W0N0 161 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 TRAPPC11Q7Z392 1133 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 LUZP1Q86V48 1076 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 TRIM59Q8IWR1 403 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 SLC39A11Q8N1S5 342 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 KLHL23Q8NBE8 558 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 HASPINQ8TF76 798 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 SLC35C1Q96A29 364 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 METTL14Q9HCE5 456 aaKnown RBP11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 SCN1AP35498 2009 aa11.57□□□□□ -0.56
SMARCA4-213ENST00000587988 C5orf67F2Z3F1 127 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 RFXAPO00287 272 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 PIRO00625 290 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 IKBKBO14920 756 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 LRRN2O75325 713 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 KIF4AO95239 1232 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 VNN1O95497 513 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 TNNC2P02585 160 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 KRT19P08727 400 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 POLR2BP30876 1174 aaKnown RBP11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 RPL9P32969 192 aaKnown RBP11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 BRCC3P46736 316 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 ENPEPQ07075 957 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 CDKAL1Q5VV42 579 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 TDRD10Q5VZ19 366 aaKnown RBP11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 DCLRE1AQ6PJP8 1040 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 C15orf39Q6ZRI6 1047 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 SV2AQ7L0J3 742 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 ARNTL2Q8WYA1 636 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 ELMO3Q96BJ8 720 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 DDX27Q96GQ7 796 aaKnown RBP11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 IGSF21Q96ID5 467 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 UROC1Q96N76 676 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 COLEC11Q9BWP8 271 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 VN1R3Q9BXE9 311 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 TTYH1Q9H313 450 aaPredicted RBP11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 ZNF576Q9H609 170 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 PLXNA4Q9HCM2 1894 aa11.56□□□□□ -0.56
SMARCA4-213ENST00000587988 AAASQ9NRG9 546 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms