RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 EPC1Q9H2F5 836 aa15.21■□□□□ 0.03
LIG3-205ENST00000585941 ASB7Q9H672 318 aa15.21■□□□□ 0.03
LIG3-205ENST00000585941 APOBEC3GQ9HC16 384 aaKnown RBP15.21■□□□□ 0.03
LIG3-205ENST00000585941 CTTNBP2NLQ9P2B4 639 aa15.21■□□□□ 0.03
LIG3-205ENST00000585941 UVRAGQ9P2Y5 699 aa15.21■□□□□ 0.03
LIG3-205ENST00000585941 MIF4GDA9UHW6 222 aaKnown RBP15.2■□□□□ 0.02
LIG3-205ENST00000585941 KCNK3O14649 394 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ERLIN2O94905 339 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ZRANB2O95218 330 aaKnown RBP eCLIP15.2■□□□□ 0.02
LIG3-205ENST00000585941 VTNP04004 478 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 CYP1A2P05177 515 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ACO1P21399 889 aaKnown RBP15.2■□□□□ 0.02
LIG3-205ENST00000585941 EEF1DP3Q658K8 133 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 DNAAF5Q86Y56 855 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 KIAA0319LQ8IZA0 1049 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ACTRT1Q8TDG2 376 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ARHGEF26Q96DR7 871 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ZBTB10Q96DT7 871 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 ADPGKQ9BRR6 497 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 MTMR12Q9C0I1 747 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 NIF3L1Q9GZT8 377 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 OSGEPQ9NPF4 335 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 NUB1Q9Y5A7 615 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 PCDHB4Q9Y5E5 795 aa15.2■□□□□ 0.02
LIG3-205ENST00000585941 TNPO2O14787 897 aaKnown RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 ADCY6O43306 1168 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 IQCF3P0C7M6 154 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 TFAMQ00059 246 aaKnown RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 C2orf54Q08AI8 447 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 MAP9Q49MG5 647 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 SPOPLQ6IQ16 392 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 HHIPL1Q96JK4 782 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 ZNF668Q96K58 619 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 PNKPQ96T60 521 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 ARID3AQ99856 593 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 KATNAL1Q9BW62 490 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 PDZD7Q9H5P4 517 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 AVENQ9NQS1 362 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 ZNF446Q9NWS9 450 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 OGFRQ9NZT2 677 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 FLRT1Q9NZU1 646 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 GJD2Q9UKL4 321 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 MGAMO43451 1857 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 SMIM35A0A1B0GVV1 85 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 MBLAC1A4D2B0 266 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 GPR25O00155 361 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 CLSTN1O94985 981 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 IGHA2P01877 340 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 STAG3L1P0CL83 205 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 SMIM10L2AP0DMW4 78 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 SMIM10L2BP0DMW5 78 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 ARF4P18085 180 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 TM4SF4P48230 202 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 DCAF4L1Q3SXM0 396 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 PRAMEF19Q5SWL8 479 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 NT5DC4Q86YG4 428 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 CD302Q8IX05 232 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 RBBP8NLQ8NC74 664 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 VCPIP1Q96JH7 1222 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 RPS6KC1Q96S38 1066 aa15.19■□□□□ 0.02
LIG3-205ENST00000585941 GCOM2Q9BZD3 368 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 TTC7AQ9ULT0 858 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 PACSIN2Q9UNF0 486 aaPredicted RBP15.19■□□□□ 0.02
LIG3-205ENST00000585941 CITO14578 2027 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 A0A1B0GUA9 196 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 FAM155AB1AL88 458 aaPredicted RBP15.18■□□□□ 0.02
LIG3-205ENST00000585941 PGRMC1O00264 195 aaKnown RBP15.18■□□□□ 0.02
LIG3-205ENST00000585941 CA12O43570 354 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 TSPAN1O60635 241 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 KPNA6O60684 536 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 CST3P01034 146 aaPredicted RBP15.18■□□□□ 0.02
LIG3-205ENST00000585941 UNGP13051 313 aaPredicted RBP15.18■□□□□ 0.02
LIG3-205ENST00000585941 CYP2B6P20813 491 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 GNA15P30679 374 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 CYP2C19P33261 490 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 TNNC1P63316 161 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 MFSD10Q14728 455 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 ZNF699Q32M78 642 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 TMEM270Q6UE05 265 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 UBR7Q8N806 425 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 USP38Q8NB14 1042 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 ZNF653Q96CK0 615 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 FAM84AQ96KN4 292 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 NAP1L3Q99457 506 aaPredicted RBP15.18■□□□□ 0.02
LIG3-205ENST00000585941 CARD9Q9H257 536 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 ACP6Q9NPH0 428 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 SETD4Q9NVD3 440 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 COG5Q9UP83 839 aa15.18■□□□□ 0.02
LIG3-205ENST00000585941 HAS3O00219 553 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 CEP104O60308 925 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 CYP1A1P04798 512 aaPredicted RBP15.17■□□□□ 0.02
LIG3-205ENST00000585941 CXCL8P10145 99 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 ATICP31939 592 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 PSEN2P49810 448 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 ZNF132P52740 706 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 MYL6P60660 151 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 OSTNP61366 133 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 VSNL1P62760 191 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 CENPCQ03188 943 aa15.17■□□□□ 0.02
LIG3-205ENST00000585941 CRHR2Q13324 411 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms