RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 C2CD2Q9Y426 696 aa9.28□□□□□ -0.92
NUP88-211ENST00000575976 PTPRJQ12913 1337 aa9.28□□□□□ -0.92
NUP88-211ENST00000575976 NRP1O14786 923 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 XPOTO43592 962 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 FGFR1OPO95684 399 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 ALDH2P05091 517 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 KRT13P13646 458 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 LAG3P18627 525 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 TNNI1P19237 187 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 CYP3A5P20815 502 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 IGFBP6P24592 240 aaPredicted RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 CLCNKBP51801 687 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 ERVK-21P61565 698 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 TFAMQ00059 246 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 BFSP1Q12934 665 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 CCDC40Q4G0X9 1142 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 C1orf220Q5T0J3 134 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 PPP2R2DQ66LE6 453 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 SCARA3Q6AZY7 606 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 KCNT2Q6UVM3 1135 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 LRSAM1Q6UWE0 723 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 INTS8Q75QN2 995 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 FRMD5Q7Z6J6 570 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 NT5DC4Q86YG4 428 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 IRF2BP1Q8IU81 584 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 WDR49Q8IV35 697 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 BEST2Q8NFU1 509 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 ZNF558Q96NG5 402 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 TGS1Q96RS0 853 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 CGRRF1Q99675 332 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 CERS4Q9HA82 394 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 SLC28A3Q9HAS3 691 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 METTL14Q9HCE5 456 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 SAMSN1Q9NSI8 373 aaKnown RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 INTS13Q9NVM9 706 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 DPP3Q9NY33 737 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 ARMCX3Q9UH62 379 aaPredicted RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 FAN1Q9Y2M0 1017 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 PRG3Q9Y2Y8 225 aaPredicted RBP9.27□□□□□ -0.93
NUP88-211ENST00000575976 NFE2L3Q9Y4A8 694 aa9.27□□□□□ -0.93
NUP88-211ENST00000575976 GBF1Q92538 1859 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 F8W810 466 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 PODXLO00592 558 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 PPEF2O14830 753 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 GNA14O95837 355 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 C4BPAP04003 597 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 TMEM191BP0C7N4 346 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 TRIM49P0CI25 452 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 TRIM49CP0CI26 452 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 LRPAP1P30533 357 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 CTNNB1P35222 781 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 BMPR1AP36894 532 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 ALDH7A1P49419 539 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 ZNF165P49910 485 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 MARSP56192 900 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 MCCD1P59942 119 aaPredicted RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 CLDN10P78369 228 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 MYL5Q02045 173 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 ENPEPQ07075 957 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 NCAPHQ15003 741 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 UPP1Q16831 310 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 DUOXA2Q1HG44 320 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 EPC2Q52LR7 807 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 HSP90AA4PQ58FG1 418 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 DCLRE1AQ6PJP8 1040 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 CD300LGQ6UXG3 332 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 TMEM173Q86WV6 379 aaPredicted RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 CREBRFQ8IUR6 639 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 SLC39A11Q8N1S5 342 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 AOPEPQ8N6M6 819 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 C1orf127Q8N9H9 656 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 CACTINQ8WUQ7 758 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 BCL7CQ8WUZ0 217 aaPredicted RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 MYLIPQ8WY64 445 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 DDX27Q96GQ7 796 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 ANKRD36BP1Q96IX9 119 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 CNOT6LQ96LI5 555 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 UROC1Q96N76 676 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 SAMD11Q96NU1 681 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 BPIFA3Q9BQP9 254 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 COLEC11Q9BWP8 271 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 MTMR12Q9C0I1 747 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 NAT10Q9H0A0 1025 aaKnown RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 THAP9Q9H5L6 903 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 MMRN2Q9H8L6 949 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 AAASQ9NRG9 546 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 FANCLQ9NW38 375 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 MARCH5Q9NX47 278 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 MTUS1Q9ULD2 1270 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 ARIH1Q9Y4X5 557 aaPredicted RBP9.26□□□□□ -0.93
NUP88-211ENST00000575976 PCDHB12Q9Y5F1 795 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 CITO14578 2027 aa9.26□□□□□ -0.93
NUP88-211ENST00000575976 LAMA2P24043 3122 aaKnown RBP9.25□□□□□ -0.93
NUP88-211ENST00000575976 TRIP11Q15643 1979 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 ANO9A1A5B4 782 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 C5orf67F2Z3F1 127 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 RFXAPO00287 272 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 PIRO00625 290 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 IKBKBO14920 756 aa9.25□□□□□ -0.93
NUP88-211ENST00000575976 B3GAT3O94766 335 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms