RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 WDR27A2RRH5 827 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 FAM170BA6NMN3 283 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 ABLIM1O14639 778 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 SLC16A4O15374 487 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 MCF2P10911 925 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 PROZP22891 400 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 ELF1P32519 619 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 FOXK2Q01167 660 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 PFKPQ01813 784 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 PRKCQQ04759 706 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 ZRSR1Q15695 479 aaKnown RBP18.47■□□□□ 0.55
CLN3-211ENST00000564091 SEZ6Q53EL9 994 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 C1orf186Q6ZWK4 172 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 RTL10Q7L3V2 364 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 MMTAG2Q9BU76 263 aaKnown RBP18.47■□□□□ 0.55
CLN3-211ENST00000564091 SLC38A7Q9NVC3 462 aa18.47■□□□□ 0.55
CLN3-211ENST00000564091 DAXXQ9UER7 740 aaPredicted RBP18.47■□□□□ 0.55
CLN3-211ENST00000564091 PRRG1O14668 218 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 TBC1D4O60343 1298 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 ABLIM3O94929 683 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 SEC24AO95486 1093 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 LRG1P02750 347 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 KCNE1P15382 129 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 CEBPBP17676 345 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 RAD51AP2Q09MP3 1159 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 TANGO2Q6ICL3 276 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 MPZL3Q6UWV2 235 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 DRC1Q96MC2 740 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 KIF2CQ99661 725 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 CORO1BQ9BR76 489 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 BCO2Q9BYV7 579 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 CYP4F11Q9HBI6 524 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 SH2B1Q9NRF2 756 aaPredicted RBP18.46■□□□□ 0.55
CLN3-211ENST00000564091 SPATA6Q9NWH7 488 aaPredicted RBP18.46■□□□□ 0.55
CLN3-211ENST00000564091 CNTN3Q9P232 1028 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 RBM19Q9Y4C8 960 aaKnown RBP18.46■□□□□ 0.55
CLN3-211ENST00000564091 NUB1Q9Y5A7 615 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 TDRD15B5MCY1 1934 aaKnown RBP18.46■□□□□ 0.55
CLN3-211ENST00000564091 ZNF292O60281 2723 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 FRYLO94915 3013 aa18.46■□□□□ 0.55
CLN3-211ENST00000564091 ARHGEF37A1IGU5 675 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 SYN3O14994 580 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 ECI2O75521 394 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 PTPN2P17706 415 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 MRPL58Q14197 206 aaKnown RBP18.45■□□□□ 0.54
CLN3-211ENST00000564091 ZC3H14Q6PJT7 736 aaKnown RBP18.45■□□□□ 0.54
CLN3-211ENST00000564091 DTHD1Q6ZMT9 781 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 KIAA2013Q8IYS2 634 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 TMEM130Q8N3G9 435 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 TCEAL4Q96EI5 215 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 LTB4R2Q9NPC1 389 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 GDE1Q9NZC3 331 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 FBXL5Q9UKA1 691 aa18.45■□□□□ 0.54
CLN3-211ENST00000564091 NRG2O14511 850 aaPredicted RBP18.44■□□□□ 0.54
CLN3-211ENST00000564091 ATF2P15336 505 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 RPL9P32969 192 aaKnown RBP18.44■□□□□ 0.54
CLN3-211ENST00000564091 SLC10A6Q3KNW5 377 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 CTXN3Q4LDR2 81 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 TPRG1Q6ZUI0 275 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 TCEAL8Q8IYN2 117 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 DCLK2Q8N568 766 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 PLIN2Q99541 437 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 HINFPQ9BQA5 517 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 C17orf75Q9HAS0 396 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 AVENQ9NQS1 362 aaPredicted RBP18.44■□□□□ 0.54
CLN3-211ENST00000564091 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.44■□□□□ 0.54
CLN3-211ENST00000564091 ANKFY1Q9P2R3 1169 aa18.44■□□□□ 0.54
CLN3-211ENST00000564091 H7C4K7 107 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 LAD1O00515 517 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 LAMTOR5O43504 91 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 GUCY2CP25092 1073 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 TARSP26639 723 aaKnown RBP18.43■□□□□ 0.54
CLN3-211ENST00000564091 MCM4P33991 863 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 PRPHP41219 470 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 CCR2P41597 374 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 SPAG1Q07617 926 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 STRN3Q13033 797 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 PRSS36Q5K4E3 855 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 TMEM161BQ8NDZ6 487 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 SUSD3Q96L08 255 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 PNMA5Q96PV4 448 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 NTPCRQ9BSD7 190 aaKnown RBP18.43■□□□□ 0.54
CLN3-211ENST00000564091 OSBPL6Q9BZF3 934 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 HEBP1Q9NRV9 189 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 TUBGCP4Q9UGJ1 667 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 INSL5Q9Y5Q6 135 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 DOCK6Q96HP0 2047 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 COL4A3Q01955 1670 aa18.43■□□□□ 0.54
CLN3-211ENST00000564091 TOM1L1O75674 476 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 PLS3P13797 630 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 CSTF1Q05048 431 aaKnown RBP18.42■□□□□ 0.54
CLN3-211ENST00000564091 ADCY1Q08828 1119 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 GRM2Q14416 872 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 FAM78AQ5JUQ0 283 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 ZBTB41Q5SVQ8 909 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 MCTP1Q6DN14 999 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 PDZD4Q76G19 769 aaPredicted RBP18.42■□□□□ 0.54
CLN3-211ENST00000564091 ERMP1Q7Z2K6 904 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 HS6ST3Q8IZP7 471 aa18.42■□□□□ 0.54
CLN3-211ENST00000564091 SPIRE2Q8WWL2 714 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms