RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 KXD1Q9BQD3 176 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 TRPV5Q9NQA5 729 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 TOPORSQ9NS56 1045 aaPredicted RBP18.04■□□□□ 0.48
CLN3-208ENST00000561505 SLC38A7Q9NVC3 462 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 MAFFQ9ULX9 164 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 POLIQ9UNA4 740 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 STK24Q9Y6E0 443 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 TRIP11Q15643 1979 aa18.04■□□□□ 0.48
CLN3-208ENST00000561505 WDR27A2RRH5 827 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 LAMTOR5O43504 91 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 KINO60870 393 aaKnown RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 TARSP26639 723 aaKnown RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 RPL9P32969 192 aaKnown RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 CCT6AP40227 531 aaKnown RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 MAPK7Q13164 816 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 TMEM132AQ24JP5 1023 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 TTC38Q5R3I4 469 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 VARS2Q5ST30 1063 aaKnown RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 ZBTB41Q5SVQ8 909 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 TPGS2Q68CL5 300 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 KIAA2013Q8IYS2 634 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 KCNN1Q92952 543 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 C8orf76Q96K31 380 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 C17orf75Q9HAS0 396 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 POLD4Q9HCU8 107 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 PRMT8Q9NR22 394 aaPredicted RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 CNTN3Q9P232 1028 aa18.03■□□□□ 0.48
CLN3-208ENST00000561505 RBM19Q9Y4C8 960 aaKnown RBP18.03■□□□□ 0.48
CLN3-208ENST00000561505 DNAH14Q0VDD8 3507 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 MCF2P10911 925 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 U2AF2P26368 475 aaKnown RBP eCLIP18.02■□□□□ 0.48
CLN3-208ENST00000561505 EPHA5P54756 1037 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 GUCY1B3Q02153 619 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 TANGO2Q6ICL3 276 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 DCLK2Q8N568 766 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 MCRS1Q96EZ8 462 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 SUSD3Q96L08 255 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 CCDC94Q9BW85 323 aaPredicted RBP18.02■□□□□ 0.48
CLN3-208ENST00000561505 TRPV4Q9HBA0 871 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 ZSCAN32Q9NX65 697 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 LRWD1Q9UFC0 647 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 KIAA1024Q9UPX6 916 aa18.02■□□□□ 0.48
CLN3-208ENST00000561505 I3L4J1 428 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 PODXLO00592 558 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 NCAM2O15394 837 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 SEC24AO95486 1093 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 TDGF1P13385 188 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 CEBPBP17676 345 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 CD72P21854 359 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 TOB1P50616 345 aaPredicted RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 FOSBP53539 338 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 YARSP54577 528 aaKnown RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 UBXN2BQ14CS0 331 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 C1orf186Q6ZWK4 172 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 MAP4K3Q8IVH8 894 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 ING5Q8WYH8 240 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 TARS2Q9BW92 718 aaKnown RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 MRPL4Q9BYD3 311 aaKnown RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 FAM126AQ9BYI3 521 aaPredicted RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 EPC1Q9H2F5 836 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 DDX19AQ9NUU7 478 aaKnown RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 SPATA6Q9NWH7 488 aaPredicted RBP18.01■□□□□ 0.47
CLN3-208ENST00000561505 FBXL5Q9UKA1 691 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 LIMCH1Q9UPQ0 1083 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 COL4A2P08572 1712 aa18.01■□□□□ 0.47
CLN3-208ENST00000561505 MED19A0JLT2 244 aaPredicted RBP18■□□□□ 0.47
CLN3-208ENST00000561505 H7C4K7 107 aa18■□□□□ 0.47
CLN3-208ENST00000561505 NRG2O14511 850 aaPredicted RBP18■□□□□ 0.47
CLN3-208ENST00000561505 ZNF197O14709 1029 aa18■□□□□ 0.47
CLN3-208ENST00000561505 EIF5BO60841 1220 aaKnown RBP18■□□□□ 0.47
CLN3-208ENST00000561505 MOSPD3O75425 235 aa18■□□□□ 0.47
CLN3-208ENST00000561505 LIG1P18858 919 aa18■□□□□ 0.47
CLN3-208ENST00000561505 TGM1P22735 817 aa18■□□□□ 0.47
CLN3-208ENST00000561505 CCR2P41597 374 aa18■□□□□ 0.47
CLN3-208ENST00000561505 MLLT6P55198 1093 aaPredicted RBP18■□□□□ 0.47
CLN3-208ENST00000561505 PEX3P56589 373 aa18■□□□□ 0.47
CLN3-208ENST00000561505 ADCY1Q08828 1119 aa18■□□□□ 0.47
CLN3-208ENST00000561505 RINT1Q6NUQ1 792 aa18■□□□□ 0.47
CLN3-208ENST00000561505 ZNF852Q6ZMS4 543 aa18■□□□□ 0.47
CLN3-208ENST00000561505 TPRG1Q6ZUI0 275 aa18■□□□□ 0.47
CLN3-208ENST00000561505 KCTD17Q8N5Z5 321 aa18■□□□□ 0.47
CLN3-208ENST00000561505 GPR161Q8N6U8 529 aaKnown RBP18■□□□□ 0.47
CLN3-208ENST00000561505 BEST2Q8NFU1 509 aa18■□□□□ 0.47
CLN3-208ENST00000561505 ASB16Q96NS5 453 aa18■□□□□ 0.47
CLN3-208ENST00000561505 MMTAG2Q9BU76 263 aaKnown RBP18■□□□□ 0.47
CLN3-208ENST00000561505 MRPS17Q9Y2R5 130 aaKnown RBP18■□□□□ 0.47
CLN3-208ENST00000561505 INSL5Q9Y5Q6 135 aa18■□□□□ 0.47
CLN3-208ENST00000561505 NCOR2Q9Y618 2525 aa18■□□□□ 0.47
CLN3-208ENST00000561505 F5P12259 2224 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 E9PMD0 336 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 LRG1P02750 347 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 GUCY2CP25092 1073 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 PRPHP41219 470 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 HMGN5P82970 282 aaKnown RBP17.99■□□□□ 0.47
CLN3-208ENST00000561505 CSTF1Q05048 431 aaKnown RBP17.99■□□□□ 0.47
CLN3-208ENST00000561505 IL17AQ16552 155 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 SLC10A6Q3KNW5 377 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 ZNF568Q3ZCX4 644 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 FAM78AQ5JUQ0 283 aa17.99■□□□□ 0.47
CLN3-208ENST00000561505 MPZL3Q6UWV2 235 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms