RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 FOXD4L3Q6VB84 417 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 USP37Q86T82 979 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 CEP57Q86XR8 500 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 ACSF2Q96CM8 615 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 FBXL18Q96ME1 805 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 KLHL5Q96PQ7 755 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 PPP1R10Q96QC0 940 aaKnown RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 PHF7Q9BWX1 381 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 ADAM7Q9H2U9 754 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 PIDD1Q9HB75 910 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 RXFP1Q9HBX9 757 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 AGO2Q9UKV8 859 aaKnown RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 MAFFQ9ULX9 164 aa9.42□□□□□ -0.9
USP3-208ENST00000558285 BARX2Q9UMQ3 279 aaPredicted RBP9.42□□□□□ -0.9
USP3-208ENST00000558285 MYMKA6NI61 221 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 PODXLO00592 558 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 EIF3DO15371 548 aaKnown RBP eCLIP9.41□□□□□ -0.9
USP3-208ENST00000558285 POLR2DO15514 142 aaKnown RBP9.41□□□□□ -0.9
USP3-208ENST00000558285 XYLBO75191 536 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 GARTP22102 1010 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 CMA1P23946 247 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 ELF1P32519 619 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 PSMD2Q13200 908 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 PDAP1Q13442 181 aaKnown RBP9.41□□□□□ -0.9
USP3-208ENST00000558285 CBX2Q14781 532 aaPredicted RBP9.41□□□□□ -0.9
USP3-208ENST00000558285 CLUL1Q15846 466 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 PSMD5Q16401 504 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 XKR4Q5GH76 650 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 RESP18Q5W5W9 173 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 CNNM4Q6P4Q7 775 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 C15orf39Q6ZRI6 1047 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 CCDC149Q6ZUS6 474 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 PIK3R5Q8WYR1 880 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 KIF12Q96FN5 646 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 MSLNLQ96KJ4 702 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 RHOBTB2Q9BYZ6 727 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 CHST7Q9NS84 486 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 KBTBD4Q9NVX7 518 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 MARCH5Q9NX47 278 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 ZDHHC7Q9NXF8 308 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 DSEQ9UL01 958 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 PCDHA7Q9UN72 937 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 C2CD2Q9Y426 696 aa9.41□□□□□ -0.9
USP3-208ENST00000558285 USP15Q9Y4E8 981 aaPredicted RBP9.41□□□□□ -0.9
USP3-208ENST00000558285 A0A0B4J269 797 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 PTGESO14684 152 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 PRPF40AO75400 957 aaKnown RBP9.4□□□□□ -0.9
USP3-208ENST00000558285 CNPP09543 421 aaKnown RBP9.4□□□□□ -0.9
USP3-208ENST00000558285 SLFN14P0C7P3 912 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 NMT1P30419 496 aaKnown RBP9.4□□□□□ -0.9
USP3-208ENST00000558285 LTBRP36941 435 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 PNPLA4P41247 253 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 SYKP43405 635 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 TMEM132DQ14C87 1099 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 UPP1Q16831 310 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 GLRA4Q5JXX5 417 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 FAM26FQ5R3K3 315 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 KIAA0319Q5VV43 1072 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 ZNF280DQ6N043 979 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 ARMCX5Q6P1M9 558 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 USP49Q70CQ1 688 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 UNC13DQ70J99 1090 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 OTOP3Q7RTS5 596 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 TAS1R3Q7RTX0 852 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 METTL23Q86XA0 190 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 ELMOD1Q8N336 334 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 GSTCDQ8NEC7 633 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 CMASQ8NFW8 434 aaPredicted RBP9.4□□□□□ -0.9
USP3-208ENST00000558285 ZNF560Q96MR9 790 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 C7orf25Q9BPX7 421 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 TRIM9Q9C026 710 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 EXOC1Q9NV70 894 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 MIOSQ9NXC5 875 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 CLEC1BQ9P126 229 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 BACE2Q9Y5Z0 518 aa9.4□□□□□ -0.9
USP3-208ENST00000558285 A0A1W2PQ27 194 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 A0A1W2PQ64 194 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 A0A1W2PQD8 194 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 FRMD3A2A2Y4 597 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 TTLL13PA6NNM8 815 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 TRIM66O15016 1216 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 LINC01565O15544 149 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 KIF4AO95239 1232 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 HNRNPA1P09651 372 aaKnown RBP eCLIP9.39□□□□□ -0.91
USP3-208ENST00000558285 CXCL8P10145 99 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 IL9P15248 144 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 CLCN4P51793 760 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 UVSSAQ2YD98 709 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 SHC4Q6S5L8 630 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 ALKAL1Q6UXT8 129 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 DSTYKQ6XUX3 929 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 TMEM173Q86WV6 379 aaPredicted RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 TDRD5Q8NAT2 981 aaKnown RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 VN1R2Q8NFZ6 395 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 LEO1Q8WVC0 666 aaPredicted RBP9.39□□□□□ -0.91
USP3-208ENST00000558285 GBP4Q96PP9 640 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 DNAI2Q9GZS0 605 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 USTQ9Y2C2 406 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 STYXL1Q9Y6J8 313 aa9.39□□□□□ -0.91
USP3-208ENST00000558285 KIAA1671Q9BY89 1806 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms